Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq18 132 4e-26 >seq18 Length=1130244 Score = 132 bits (146), Expect = 4e-26 Identities = 299/438 (68%), Gaps = 11/438 (3%) Strand=Plus/Minus Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 ||||||| ||||| ||||| |||||||| || || ||||| | | | ||| || Sbjct 427500 TGGCGTTCTTTGCCGCGAGTGACGGGATCGTGAACGAAAACCTCGCGATGAACTTTA-GC 427442 Query 43914 AA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| ||| | || ||||| || || || || ||||| || |||||||| || || Sbjct 427441 AATGAAGTACAAGTGCCTGAAGCCCGGTGCTTCTACGGGTTCCAGATTGCCATTGAGAAC 427382 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCAC-GAGAA 44031 ||||| || ||| ||||| || || || || ||||||||||| ||| | ||| || || Sbjct 427381 ATTCACTCTGAAGTGTACTCGCTCCTCATCGACACGTACATCAAGGAT-GCCACGGAAAA 427323 Query 44032 GCATCGATTGTTTAATGCGATAGAAAC-AGTACCTGCGATTAAACATAAAGCAGACTGGG 44090 | | || | | ||| || || || | |||| | | || ||||| ||||| Sbjct 427322 GGACCGGGTCCTGCGTGCCATTGACACGATCCCCTGTG-TCCGACGCAAAGCCACCTGGG 427264 Query 44091 CCCTTAAATGG---ATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAG 44147 | | || ||| ||| || | | | | ||||| | || || ||||| | Sbjct 427263 CTTTGAAGTGGTGCGACAATAAGCGTGCTGCCTACGCTGAACGTATCGTTGCCTTTGCCG 427204 Query 44148 TTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGA 44206 ||| |||||||| ||||| || || ||||| ||| |||| || ||| | ||||| ||| Sbjct 427203 CTGTCGAAGGCATCTTCTTCTCGGGGTCGTTCTGC-TCCATCTTCTGGCTCAAGAAGCGA 427145 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 ||| | ||||| || ||| | || || || || | || ||| || ||||| | || Sbjct 427144 GGTCTAATGCCGGGTTTGTCCTTCTCGAACGAACTCATTTCTCGCGACGAAGGTCTGCAC 427085 Query 44267 TGCGATTTTGCTTGCTTG 44284 ||||| ||||| |||||| Sbjct 427084 TGCGACTTTGCGTGCTTG 427067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453670038405