Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq18 120 4e-22 seq1 96.9 4e-15 >seq18 Length=1130244 Score = 120 bits (132), Expect = 4e-22 Identities = 309/461 (67%), Gaps = 26/461 (6%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||| || ||||||||||| || | || || | ||||| Sbjct 426786 TACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 426845 Query 122431 AAGTCAAATGGATTCTT---CGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGA 122487 |||| || || ||||| ||||| | |||| | | || | || |||||| Sbjct 426846 CAGTCGAACGGGTTCTTGGCCGCGTACAGCTTGGGGG---CGCCGAGGGCTTCGAGGAGG 426902 Query 122488 CGATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT 122546 ||||||| || | |||||||||||||| |||| |||||||| || ||||| | Sbjct 426903 CGATCCGCGCAGA-ACTCAATGTACTCGCACATGAGGGACGAGTTCATGCCAATGAGCTC 426961 Query 122547 ACATGGGAGTGCGTCCAA-GATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 || ||| || || || ||| ||||||||| | || || || ||||| Sbjct 426962 -CACGGGCAGGCTCTCACTGACAAACTGCTTCTCAATCGCGACGGCGTCGCCGACGATCT 427020 Query 122606 CGTGGATAGTTTCGGTAGTGGGTCTATT-----ACGCAAAGTCTTGAAGAGCTC---CAC 122657 ||||||| || | || || | | | ||| || | || | || ||| Sbjct 427021 CGTGGATG----CGCTGGTCGGACAACTTGTTGACG---AGCTTCGAGTACATCAAGCAC 427073 Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 | |||| || ||| ||||| || || || ||||| ||||| || |||||| | | ||| Sbjct 427074 G-CAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGAAGGACAAACC 427132 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| ||||| |||||||| | ||| | || | |||||| ||||| ||||||||||| Sbjct 427133 CGGCATTAGACCTCGCTTCTTGAGCCAGAAGATGGAGCAGAACGACCCCGAGAAGAAGAT 427192 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 || || ||| ||||| |||| | ||||| ||| ||| Sbjct 427193 GCCTTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGG 427233 >seq1 Length=2817317 Score = 96.9 bits (106), Expect = 4e-15 Identities = 277/420 (66%), Gaps = 7/420 (2%) Strand=Plus/Plus Query 111662 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGCCCAGC---T 111718 || || |||||||| || || | || | || | || |||||||| ||| | | Sbjct 1825330 ATGTCAGCGTGCCAAGGTTCCAAGTACATGGCAAACGACCCCTTTCGCTTTCCACCGCCT 1825389 Query 111719 TGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGAT 111778 || | ||||| || || ||| |||| || ||||||||||| ||||| || || | || Sbjct 1825390 TGGTCGACATAACGGGCCGTGTCGTTGAACACGCGAAGCATGGGAATGATCCCGTTCGAA 1825449 Query 111779 TGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCC 111837 || || || || ||||| || | || |||| | | | ||||||| || || Sbjct 1825450 GACCCGTTCGTTCCTCGAATGT-AGCTGTTCGTGGCGCGGATGTTGTGGATGTTCACACC 1825508 Query 111838 AATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTT 111897 || || ||||||||||| || || ||| || | | | || | || || || | Sbjct 1825509 GATTCCACCAGCCCACTTGGAAATGCACGCGCAGTTTTTCAATGTGTCGTAAATGCCTTC 1825568 Query 111898 GATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACC 111957 || ||||| || || ||| | | ||||| || | || || | || || || Sbjct 1825569 AATCGAGTCGTCTTTCATGGACAGCAAAAAGCACGACGAGAGTTGAGGGCGCGGCGTGCC 1825628 Query 111958 AGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATG 112016 |||||||| | || ||||||||||| | || ||| ||||||||| | ||||| | Sbjct 1825629 GGCATTGAACAACGTGGGTGTTGCGTGGGT-AAAGTACAATTGGGACATGTACTCGTAGG 1825687 Query 112017 TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGT 112076 | |||||| || || ||||| || ||||||||| | || || ||||| | ||||| Sbjct 1825688 TGGTCAAGACGGACTCGATGTCATCTTTGTGGATGCCCACAGCCACACGCATAATCATGT 1825747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028223957600