Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq18 127 3e-24 seq1 91.5 2e-13 >seq18 Length=1130244 Score = 127 bits (140), Expect = 3e-24 Identities = 336/498 (67%), Gaps = 20/498 (4%) Strand=Plus/Plus Query 129722 TTGCCATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTC 129781 |||| || || || || ||||||||||| ||||| ||||| || | | ||| | Sbjct 426780 TTGCTGTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGCGAGATCATG 426839 Query 129782 TCCATAAAATCAAATGGGTTCTTTGAGT--TCCAAATTGCTGGCACTCCAATCTGTTTGA 129839 ||||| | || || |||||||| | | || ||| ||| | | | || || Sbjct 426840 TCCATCCAGTCGAACGGGTTCTTGGCCGCGTACAGCTTGGGGGCGC--CGAGGGCTTCGA 426897 Query 129840 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGA 129899 |||| ||||||| | | ||||||||||||| |||| |||||||| || |||| Sbjct 426898 GGAGGCGATCCGCGCAGAACTCAATGTACTCGCACATGAGGGACGAGTTCATGCCAATGA 426957 Query 129900 GGTTACATGGGAGCGCGTCCAA-GATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACG 129958 | | || ||| || || || ||| ||||||||| | || || || | ||| Sbjct 426958 GCTC-CACGGGCAGGCTCTCACTGACAAACTGCTTCTCAATCGCGACGGCGTCGCCGACG 427016 Query 129959 ATGGCGTGAATGGTCTCCGT--GCCAGGTCTATTG-CGCAAAGTCTTGAAGAGTTC---C 130012 || |||| ||| || || | || | | ||| || || | || | || | Sbjct 427017 ATCTCGTGGATGCGCTG-GTCGGACAACT-TGTTGACG---AGCTTCGAGTACATCAAGC 427071 Query 130013 ACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 130072 ||| |||| || ||| ||||| ||||| || || |||||||| ||||||||| ||| | Sbjct 427072 ACG-CAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGAAGGACAAA 427130 Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || ||||| ||||| |||||||| | |||||| || | || || || || ||||||||| Sbjct 427131 CCCGGCATTAGACCTCGCTTCTTGAGCCAGAAGATGGAGCAGAACGACCCCGAGAAGAAG 427190 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGGGACTTTGTATC 130191 || || || ||| || || |||| || ||| ||||| ||| ||| | ||| | || Sbjct 427191 ATGCCTTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCACG-CTTATTGTC 427249 Query 130192 AAACCACTTCATCGCCCA 130209 ||||||||| ||||| Sbjct 427250 GCACCACTTCAAAGCCCA 427267 >seq1 Length=2817317 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 117833 TGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGA 117892 ||| |||||||| ||||| || ||||||||||| ||||||| || || | ||||| || Sbjct 1823991 TGAGCGGAGGTAATACATGCCGGTCTTGAGCCCACGCTTCCACGCGTAAAAGTGCATCGA 1824050 Query 117893 GGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGAT 117952 | | |||| || | |||| | | ||| | |||||| |||| ||| ||| Sbjct 1824051 CGTGAGCTTGCTGATGCTTGGGTCTGCGATGTGCACGTTCATGGATTGGCTTTGGCAGAT 1824110 Query 117953 GAA-GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAG 118011 ||| ||| || || || || |||| || | ||| |||| ||||||||||||||||| Sbjct 1824111 GAATGCG-CCTCGGTCGGCAGCCAGGTCGAGCACGACCTTTTGCTTGATTTCCCACACAG 1824169 Query 118012 TCCTGTA 118018 || |||| Sbjct 1824170 TCTTGTA 1824176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431481658360