Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq18 131 2e-25 seq1 93.3 5e-14 seq26 91.5 2e-13 >seq18 Length=1130244 Score = 131 bits (144), Expect = 2e-25 Identities = 202/286 (71%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||||| | || ||| | | | || | ||||| | Sbjct 427357 CTCATCGACACGTACATCAAGGATGCCACGGAAAAGGACCGGGTCCTGCGTGCCATTGAC 427298 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 || | || ||| | | | ||||| |||||| ||||||||| || | ||| || Sbjct 427297 ACGATCCCCTGTGTCCGACGCAAAGCCACCTGGGCTTTGAAGTGGTGCGACAATAAG-CG 427239 Query 94792 CGTT-CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | | ||| ||||| || || | || ||||| ||| || || ||||||||||| || Sbjct 427238 TGCTGCCTACGCTGAACGTATCGTTGCCTTTGCCGCTGTCGAAGGCATCTTCTTCTCGGG 427179 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || |||||| | || | |||||||||||||||||||| ||||| ||| | | |||||| Sbjct 427178 GTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGTCTAATGCCGGGTTTGTCCTTCTC 427119 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 ||||| || || ||||| ||||| || || ||| || |||||| Sbjct 427118 GAACGAACTCATTTCTCGCGACGAAGGTCTGCACTGCGACTTTGCG 427073 >seq1 Length=2817317 Score = 93.3 bits (102), Expect = 5e-14 Identities = 276/420 (66%), Gaps = 7/420 (2%) Strand=Plus/Minus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| | ||||| ||||| | || || || || ||||| || || |||||| | Sbjct 1825747 ACATGATTATGCGTGTGGCTGTGGGCATCCACAAAGATGACATCGAGTCCGTCTTGACCA 1825688 Query 104289 CATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTTCAATGCT 104347 | ||||| | ||||||||| ||| || | ||||||||||| || | |||||||| Sbjct 1825687 CCTACGAGTACATGTCCCAATTGTACTTT-ACCCACGCAACACCCACGTTGTTCAATGCC 1825629 Query 104348 GGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATC 104407 || || || | || ||| | || ||||| | | ||| || || ||||| || Sbjct 1825628 GGCACGCCGCGCCCTCAACTCTCGTCGTGCTTTTTGCTGTCCATGAAAGACGACTCGATT 1825569 Query 104408 AACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATT 104467 | || || || | || | | | || ||| || || ||||||||||| || || Sbjct 1825568 GAAGGCATTTACGACACATTGAAAAACTGCGCGTGCATTTCCAAGTGGGCTGGTGGAATC 1825509 Query 104468 GGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAATGGTCA 104526 || || ||||||| | | | |||| || | || ||||| || || || || Sbjct 1825508 GGTGTGAACATCCACAACATCCGCGCCACGAACAGCT-ACATTCGAGGAACGAACGGGTC 1825450 Query 104527 ATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCA 104586 || | || || ||||| ||||||||||| || |||| ||| || || ||||| | || Sbjct 1825449 TTCGAACGGGATCATTCCCATGCTTCGCGTGTTCAACGACACGGCCCGTTATGTCGACCA 1825390 Query 104587 A---GCTGGGCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATAT 104643 | | ||| |||||||| || | || | || | || || |||||||| || || Sbjct 1825389 AGGCGGTGGAAAGCGAAAGGGGTCGTTTGCCATGTACTTGGAACCTTGGCACGCTGACAT 1825330 >seq26 Length=915853 Score = 91.5 bits (100), Expect = 2e-13 Identities = 182/268 (68%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 168431 GTAAAGATATACCTCG--TTTGAGACGCATCCTTACCACCCATGAGACGCGTACCAAACT 168488 ||||||||||||| || ||| | || ||||| || || ||| ||||| ||||||| Sbjct 570573 GTAAAGATATACCGCGGACTTGCG--GCGTCCTTGCCGCCTTGGAGCCGCGTCCCAAACT 570516 Query 168489 GACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGA 168548 | || |||| | || || || ||||| || || | |||| | ||||| |||| Sbjct 570515 GTCCGGACGGGACGAGGAGCGGGACGTTGTTGGACCCGACAAAGTCCTGCGCCATGTTGA 570456 Query 168549 CAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATG 168608 | |||||| ||| ||| |||| |||||||| ||||| | | ||| ||| | Sbjct 570455 CGATCGTGGATAGGAGGGAGGCTTCCCCGTGGTGATACGCCGTGTGCTCGGCGCAGTAAC 570396 Query 168609 CCGCCAACTGCGCCACTTTCATCTCATCCTTGAGATTCTTGTGGAAGCATGCGTACATAA 168668 |||| | ||| || |||||||| || | || | | | | ||||| || | | | Sbjct 570395 CCGCGAGCTGGGCGACTTTCATTTCTGCAACCAGGTGCCGGCGAAAGCACGCAAAGAGCA 570336 Query 168669 CCTTGCGTTGCGAAGGCTTGAGACCATC 168696 | ||||| ||||| |||||||| || || Sbjct 570335 CTTTGCGCTGCGACGGCTTGAGGCCGTC 570308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257293144440