Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 176 5e-39 seq18 156 5e-33 >seq1 Length=2817317 Score = 176 bits (194), Expect = 5e-39 Identities = 499/748 (67%), Gaps = 38/748 (5%) Strand=Plus/Minus Query 19793 CAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAAT 19852 || || || || ||||| |||||||||| |||||||| || |||| |||||| || Sbjct 1825022 CAAGTAGAAACAGGCACCCCGTACATGTTGTACAAGGATGCGTGCAACGGCAAGTCCAAC 1824963 Query 19853 CAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCC 19912 || ||||| ||||| ||||||| ||| |||| |||| |||||||| ||| | | Sbjct 1824962 CAACAGAACCTCGGCACGATCAAATCGAGCAACTTGTGCTGCGAAATCATCGAG-TACAC 1824904 Query 19913 AAGCCG-GACGAGACTGCCGTGTGTAATCTGGCGTCCCT-GTGCCTGCCGACTTTCGTCA 19970 ||| ||||| |||||||| || |||| ||| | | || || | ||| || Sbjct 1824903 GAGCAAAGACGAAGTCGCCGTGTGCAACTTGGCATCCATCGCGCTCTCCAAGTTT-GTTG 1824845 Query 19971 AGGCCTCCTCCTTCGACTTTGCCAAA--TTGTACGAGGTGACCCGGGTCGTCACGCGTAA 20028 || | | |||||||| |||| ||| || || | || ||| |||||| || Sbjct 1824844 AGAACGGCGTGTTCGACTT--CCAACACTTGCACAAGATCGCCAAGGTGGTCACGACCAA 1824787 Query 20029 TCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATAT 20088 |||| |||||||| |||| ||||| | ||| | |||||||| || || Sbjct 1824786 CTTGAACAAGGTCATCGACGTCAACTACTACCCCATCGAAGAAGCGCGCAACAGCAACAT 1824727 Query 20089 GCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGA--CGTTT-TCATGATGCT 20145 ||| ||||| ||||||| || || ||||| || ||||| || ||||| || | ||| Sbjct 1824726 GCGGCACCGCCCGATCGGCATTGGTGTCCAAGGGCTGGCGGATGCGTTTATCCTCATG-- 1824669 Query 20146 CGGCCTCTCATTCGA--CGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCC 20203 || || | ||||| || |||||| | || | | ||| | ||||| ||| | Sbjct 1824668 -GGATTCGCGTTCGAGTCGC-CCCAAGCCAAGCT-GTTGAACCAACAGATCTTTGAGACG 1824612 Query 20204 GTGTACCACGCGGCCCTCCTGGAATCGTGC---GAACTCGCCAAAGAGGACGGCCCGTAC 20260 | |||||||| ||| | |||| | | | |||||||| |||| | | || || ||| Sbjct 1824611 ATCTACCACGCCGCCAT---GGAAACTTCCATGGAACTCGCAAAAGCGCAAGGGCCTTAC 1824555 Query 20261 GAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTC 20320 || |||| | | |||||||||| | |||| | ||||| || |||||| || Sbjct 1824554 GAAACGTACCACGGGTCGCCCGTAAGCAAGGGGCTGTTCCAGTACGATATGTGGAATGTT 1824495 Query 20321 ACTGAGAATGAGTTTTGGA---GCGCCCTCAAGGTTGAGA--TCAAGACCCACGG----G 20371 || | | | ||| | ||| | ||||| | ||||| | | | | | Sbjct 1824494 ACCCCGTCGCCGCTGTGGGATTGGGCC----ACGTTGAAAGCTCAAGTCGCTCAGCACGG 1824439 Query 20372 CTTC-GCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGG 20430 | || | || |||||||| | || || ||||| ||||| ||||||||||||||| | || Sbjct 1824438 CATCAGGAATTCGTTGCTGTTGGCCCCGATGCCTACCGCGTCGACCGCCCAGATCCTTGG 1824379 Query 20431 GAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGG 20490 ||||||||| | ||||||| | ||||| |||||| ||| || ||| |||| || Sbjct 1824378 CAACAACGAGTCCATCGAGCCCTTCACGAGCAACATGTACAGCCGCCGTGTCTTGGCAGG 1824319 Query 20491 TGAGTTCGTCATGGTAAACAAGCACCTG 20518 ||| ||| || || |||||| || || Sbjct 1824318 TGAATTCACGATTGTGAACAAGTACTTG 1824291 Score = 172 bits (190), Expect = 6e-38 Identities = 291/415 (70%), Gaps = 10/415 (2%) Strand=Plus/Plus Query 79477 ATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCC 79536 ||||| |||||||| || |||| || ||||| ||||| ||||| ||||| || ||||| Sbjct 1825330 ATGTCAGCGTGCCAAGGTTCCAAGTACATGGCAAACGACCCCTTTCGCTTTCCACCGCCT 1825389 Query 79537 TGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGT-CGGC 79595 |||| ||| || |||||||||| |||||| || || |||||||| | ||| |||| || Sbjct 1825390 TGGTCGACATAACGGGCCGTGTCGTTGAACACGCGAAGCATGGGAATGATCCCGTTCGAA 1825449 Query 79596 GACGCCGTTCGTCCCGTTGATTCGTGTACC-GCTCG---CCCGAATGTTCGAGCAGTGGA 79651 ||| |||||||| || | || | ||| | | ||| | || ||||| | || | Sbjct 1825450 GAC-CCGTTCGTTCC-TCGAAT---GTAGCTGTTCGTGGCGCGGATGTTGTGGATGTTCA 1825504 Query 79652 TTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGC 79711 ||||| || || | ||||||||| ||| |||||| | || | || ||||| |||| Sbjct 1825505 CACCGATTCCACCAGCCCACTTGGAAATGCACGCGCAGTTTTTCAATGTGTCGTAAATGC 1825564 Query 79712 CCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCG 79771 | || ||||||||||| ||||| | | || ||||| ||| | || ||| || Sbjct 1825565 CTTCAATCGAGTCGTCTTTCATGGACAGCAAAAAGCACGACGAGAGTTGAGGGCGCGGCG 1825624 Query 79772 TACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGT 79831 | ||||| ||||| | || || || ||||| || ||| || |||| ||| |||| Sbjct 1825625 TGCCGGCATTGAACAACGTGGGTGTTGCGTGGGTAAAGTACAATTGGGACATGTACTCGT 1825684 Query 79832 ACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 79886 | || | |||| | || ||| || ||||||||| || || || ||||| Sbjct 1825685 AGGTGGTCAAGACGGACTCGATGTCATCTTTGTGGATGCCCACAGCCACACGCAT 1825739 Score = 165 bits (182), Expect = 9e-36 Identities = 477/721 (66%), Gaps = 26/721 (4%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 ||| || || |||| | ||||| ||| |||||| ||||| | ||||||| | ||| Sbjct 1824312 GAATTCACCTGCCAAGACACGGCGGCTGTACATGTTGCTCGTGAAGGGCTCGATGGACTC 1824371 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 |||||| || | ||||||||||||||| ||||| ||||| || || | ||| | ||||| Sbjct 1824372 GTTGTTGCCAAGGATCTGGGCGGTCGACGCGGTAGGCATCGGGGCCAACAGCAACGAATT 1824431 Query 78627 CCGAAGACCATGC-----GTCTTGATCT--CGACCTTTAGGCCG--TCCCAAAATTCATT 78677 || | || ||| | ||||| || | || | |||| ||||| | Sbjct 1824432 CCTGATGCCGTGCTGAGCGACTTGAGCTTTCAACGT---GGCCCAATCCCACAGCGG--- 1824485 Query 78678 CGCCGCGATCCC---CCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTT 78734 || || | | | |||||| || || | | |||| | | |||||||| | Sbjct 1824486 CGACGGGGTAACATTCCACATATCGTACTGGAACAGCCCCTTGCTTACGGGCGACCCGTG 1824545 Query 78735 GAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATG-ACTCGAGCAGGGCCGCGT 78793 | |||| ||||||| || | | | || |||||||| |||| | || ||| |||| Sbjct 1824546 GTACGTTTCGTAAGGCCCTTGCGCTTTTGCGAGTTC-CATGGAAGTTTCCATGGCGGCGT 1824604 Query 78794 GGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGT-CTCGTCGAACGAA 78852 |||| | | ||| ||||| | ||| | | || | ||||| | ||||||| Sbjct 1824605 GGTAGATCGTCTCAAAGATCTGTTGGTTCAACA-GCTTGGCTTGGGGCGACTCGAACGCG 1824663 Query 78853 AGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGG 78912 | || | | || || |||| ||||| || ||||| || || ||||||| ||||| Sbjct 1824664 AATCCCATGAGGATAAACGCATCCGCCAGCCCTTGGACACCAATGCCGATCGGGCGGTGC 1824723 Query 78913 CGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTC 78972 ||||||||||| || || || | ||| | ||||| |||| |||||||| |||| Sbjct 1824724 CGCATGTTGCTGTTGCGCGCTTCTTCGATGGGGTAGTAGTTGACGTCGATGACCTTGTTC 1824783 Query 78973 AGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCT 79032 | ||| |||||| ||| | | || || ||| | ||| || || | | | Sbjct 1824784 AAGTTGGTCGTGACCACCTTGGCGATCTTGTGCAAGTGTTGGAAGTCGAAC--ACGCCGT 1824841 Query 79033 T-TGATGAAAGTCGGTAGGCAC-AGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGC 79090 | | | ||| | || || | | ||||||| |||||||||||| ||||| || Sbjct 1824842 TCTCAACAAACTTGGAGAGCGCGATGGATGCCAAGTTGCACACGGCGACTTCGTCTTTGC 1824901 Query 79091 TAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCT 79150 | | |||||||||||| |||||| || ||| ||||| ||||||| ||||| | Sbjct 1824902 TCGTGTACTCGATGATTTCGCAGCACAAGTTGCTCGATTTGATCGTGCCGAGGTTCTGTT 1824961 Query 79151 GGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCT 79210 ||||| ||| |||| || || |||||||| |||||||||| || || || || || | Sbjct 1824962 GGTTGGACTTGCCGTTGCACGCATCCTTGTACAACATGTACGGGGTGCCTGTTTCTACTT 1825021 Query 79211 G 79211 | Sbjct 1825022 G 1825022 >seq18 Length=1130244 Score = 156 bits (172), Expect = 5e-33 Identities = 319/468 (68%), Gaps = 11/468 (2%) Strand=Plus/Minus Query 59658 GATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTC 59717 || |||| |||||| | || |||| | ||||||| | || ||||| ||||| Sbjct 427549 GACTGGGTCAAGCTTACCGACAACGAACGTTTCTTCATCACGCATGTGCTGGCGTTCTTT 427490 Query 59718 GCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAG 59777 || |||||||| || || |||| ||||| | | ||||||||| ||| || || || Sbjct 427489 GCCGCGAGTGACGGGATCGTGAACGAAAACCTCGCGATGAACTTTAGCAATGAAGTACA- 427431 Query 59778 ATTGCC-GAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGA 59836 | |||| || ||||||| ||||||| || ||| || ||| || ||||| || Sbjct 427430 AGTGCCTGAAGCCCGGTGCTTCTACGGGTTCCAGATTGCCATTGAGAACATTCACTCTGA 427371 Query 59837 GACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG--CTGGTCTG 59894 |||||||||| | ||||| | || |||||||| | || |||| | |||| Sbjct 427370 AGTGTACTCGCTCCTCATCGACACGTACATCAAGGATGCCACGGAAAAGGACCGGGTCC- 427312 Query 59895 TTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGG 59954 | |||||||| || ||| |||| || || ||||| ||||| || ||||| Sbjct 427311 -TGCGTGCCATTGACACGATCCCCTGTGTCCGACGCAAAGCCACCTGGGCTTTGAAGTGG 427253 Query 59955 ATGAGTCCTGGAGCAT----CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGG 60010 || | | ||| | | | || ||||| || | || ||||| || ||||| Sbjct 427252 -TGCGACAATAAGCGTGCTGCCTACGCTGAACGTATCGTTGCCTTTGCCGCTGTCGAAGG 427194 Query 60011 AATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCC 60070 ||||||||||| || |||||||| | || ||||||||||| ||||| || || ||||| Sbjct 427193 CATCTTCTTCTCGGGGTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGTCTAATGCC 427134 Query 60071 GGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||| || ||||| ||||| || ||||| || ||||| || || || Sbjct 427133 GGGTTTGTCCTTCTCGAACGAACTCATTTCTCGCGACGAAGGTCTGCA 427086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521501994640