Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 190 2e-43 seq18 145 8e-30 seq26 134 2e-26 seq9 82.4 8e-11 >seq1 Length=2817317 Score = 190 bits (210), Expect = 2e-43 Identities = 264/364 (73%), Gaps = 8/364 (2%) Strand=Plus/Minus Query 53246 ACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCT 53305 || ||||| | ||| |||| ||||||||| ||||| || || || ||||||| || Sbjct 1825688 ACCTACGAGTACATGTCCCAATTGTACTTTACCCACGCAACACCCACGTTGTTCAATGCC 1825629 Query 53306 GGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATC 53365 || ||| | |||||| | ||| ||||| || || | ||||| || |||||||| Sbjct 1825628 GGCACGCCGCGCCCTCAACTCTCGTCGTGCTTTTTGCTGTCCATGAAAGACGACTCGATT 1825569 Query 53366 GACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATC 53425 || ||||| ||||| || | || | || || ||| ||||||||| | ||||| ||| Sbjct 1825568 GAAGGCATTTACGACACATTGAAAAACTGCGCGTGCATTTCCAAGTGGGCTGGTGGAATC 1825509 Query 53426 GGTATCCACTGCTCGAACGTCCGTGC---GAACGGCACACCAATCAAGGGGACGAACGGC 53482 ||| | || | ||| |||| || |||| || || || ||| |||||||| Sbjct 1825508 GGTGTGAACATCCACAACATCCGCGCCACGAACAGCTA--CATTCGAGGA-ACGAACGG- 1825453 Query 53483 GTCGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAA 53541 ||| ||| || ||| | || ||||| ||||| |||||| |||||||||| || ||| | Sbjct 1825452 GTCTTCGAACGGGATCATTCCCATGCTTCGCGTGTTCAACGACACGGCCCGTTATGTCGA 1825393 Query 53542 CCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 ||| || ||||| ||||| ||||||||||| ||||| ||| | || || |||||||| || Sbjct 1825392 CCAAGGCGGTGGAAAGCGAAAGGGGTCGTTTGCCATGTACTTGGAACCTTGGCACGCTGA 1825333 Query 53602 CATT 53605 |||| Sbjct 1825332 CATT 1825329 Score = 107 bits (118), Expect = 2e-18 Identities = 533/826 (65%), Gaps = 32/826 (4%) Strand=Plus/Minus Query 55139 AACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAAC 55198 ||| ||||| |||||||||| || |||||||| | |||| |||||||| |||| Sbjct 1824788 AACTTGAACAAGGTCATCGACGTCAACTACTACCCCATCGAAGAAGCGCGCAACAGCAAC 1824729 Query 55199 CTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTC 55258 | |||||||| || |||| ||| ||||| || || |||| || || || | | Sbjct 1824728 ATGCGGCACCGCCCGATCGGCATTGGTGTCCAAGGGCTGGCGGATGCGTTTATCCTCATG 1824669 Query 55259 GGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATT-AACCAGGACATCTTC-AGTCGCA 55316 ||||| | ||||| ||| | || | || || ||||| | ||||| || || | Sbjct 1824668 GGATTCGCGTTCGAGTCGCCCCAAGC-CAAGCTGTTGAACCAACAGATCTTTGAGACG-A 1824611 Query 55317 TCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCG-AGGGGACCTACGAG 55375 ||||| || || | || || | || || | |||| | ||| | ||||| Sbjct 1824610 TCTACCACGCCGCCATGGAAACTTCCATGGAACTCGCAAA-AGCGCAAGGGCCTTACGAA 1824552 Query 55376 ACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGT-- 55433 |||| || | ||||| | |||||| || |||||| |||| ||| || | || Sbjct 1824551 ACGTACCACGGGTCGCCCGTAAGCAAGGGGCTGTTCCAGTACGAT--ATGTGGAATGTTA 1824494 Query 55434 --CTGACCCCA-TGTTTGA------CAAGTTGAAGCATGACATTCACTT-GTGGGGCCTA 55483 | | | || ||| || || |||||| | | | || || | ||| | Sbjct 1824493 CCCCGTCGCCGCTGTGGGATTGGGCCACGTTGAAAGCTCA-AGTCGCTCAGCACGGCATC 1824435 Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 | || || |||| |||| || ||||| ||||||||||| || |||||| | |||||| Sbjct 1824434 AGGAATTCGTTGCTGTTGGCCCCGATGCCTACCGCGTCGACCGCCCAGATCCTTGGCAAC 1824375 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| | ||||||| | ||||| |||||| ||| ||||| | | |||||||| Sbjct 1824374 AACGAGTCCATCGAGCCCTTCACGAGCAACATGTACAGCCGCCGTGTCTTGGCAGGTGAA 1824315 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || | |||||| || | | ||||| || | || | ||||||| || Sbjct 1824314 TTCACGATTGTGAACAAGTACTTGATGAAGGAGCTCATTTCGCTCGGCCTGTGGAACGCG 1824255 Query 55664 CAGATC--AAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TC-TGGAGATTC 55718 | || | | ||| ||| || || | || || ||||| || | ||| | Sbjct 1824254 GACGTCCGCAACCAGATCTTGCACG--ACCGCGGCAGTGTGCAGAACGTCGCGTCGATCC 1824197 Query 55719 CTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGATT 55777 || || | | ||||| | ||| ||| |||||||| || || ||| ||| || | Sbjct 1824196 CTGCGCATGTGAAGGAAGTGTACAAGACTGTGTGGGAAATCAAGCAAAAG-GTCGTGCTC 1824138 Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT- 55836 ||| || ||| || || || || | |||| ||| ||| || ||||| | ||| Sbjct 1824137 GACCTGGCTGCCGACCGAGGCGCATTCATCTGCCAAAGCCAATCCATGAACGTGCACATC 1824078 Query 55837 GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896 | ||| | || | |||| | | |||||||||||||||| ||||||| || || Sbjct 1824077 GCAGACCCAAGCA-TCAGCAAGCTCACGTCGATGCACTTTTACGCGTGGAAGCGTGGGCT 1824019 Query 55897 CAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGCCAAGGCG 55942 |||||| || ||||| || || || | ||| | || ||| | ||| Sbjct 1824018 CAAGACCGGCATGTATTACCTCCGCTCACGCCCGAAAGCCGATGCG 1823973 >seq18 Length=1130244 Score = 145 bits (160), Expect = 8e-30 Identities = 562/868 (65%), Gaps = 19/868 (2%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || |||||||||||||| || | | |||||| | |||||| Sbjct 426786 TACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 426845 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCT---CCCCAAACTGTGCCATGAGG 74579 |||||||| |||||||| || |||| | |||| | || | | | | |||| Sbjct 426846 CAGTCGAACGGGTTCTTGGCCGCGTACA---GCTTGGGGGCGCCGAGGGCTTCGAGGAGG 426902 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 |||||||| || | |||||||| ||| || | |||||| ||||| | Sbjct 426903 CGATCCGCGCAGAACTCAATGTACTCGCACATGAGGGACGAGTTCATGCCAATGAGCTC- 426961 Query 74640 CACGG-CAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATC 74696 ||||| ||| ||| ||| ||||| |||| | |||| | | | | ||| ||| Sbjct 426962 CACGGGCAGGCTCTCACTGACAAACTGCTTCTCAA--TCGCGACGGCGTCGCCGACGATC 427019 Query 74697 TTGTGAATGTCTTTGGAAGGGCA-CTTTTCCCTCAGGTGAGAGTAAAGCGT-CACGGCAA 74754 | ||| ||| | ||| || || ||| | || | ||||| | | |||| ||| Sbjct 427020 TCGTGGATG-CGCTGGTCGGACAACTTGTTGACGAGCTTCGAGTACATCAAGCACG-CAA 427077 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 | || ||| ||||| || | || | ||| ||||| || || | || |||| Sbjct 427078 AGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGAAGGACAAACCCGGCA 427137 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || || |||||||| | ||| ||||||| ||||| || || |||||||||||||| Sbjct 427138 TTAGACCTCGCTTCTTGAGCCAGAAGATGGAGCAGAACGACCCCGAGAAGAAGATGCCTT 427197 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA-TCGGA-AGTC-ATCCAAG 74931 ||||| |||||||| || | |||| ||| | | ||| | | ||| ||| Sbjct 427198 CGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCACGCTTATTGTCGCACCACT 427257 Query 74932 TCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGC 74991 || |||||| ||||| ||| ||| |||| || || || || | | || | Sbjct 427258 TCAAAGCCCAGGTGGCTTTGCGTCGGACACAGGGGATCGTGTCAATGGCACGCAGGACCC 427317 Query 74992 TTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAAT 75051 |||| || || |||||||| | | |||| || | || |||||| || || | Sbjct 427318 GGTCCTTTTCCGTGGCATCCTTGATGTACGTGTCGATGAGGAGCGAGTACACTTCAGAGT 427377 Query 75052 GAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT 75111 |||| ||| || |||| || ||||||| |||| || || | | ||||| | Sbjct 427378 GAATGTTCTCAATGGCAATCTGGAACCCGTAGAAGCACCGGGCTTCAGGCACTTGTACTT 427437 Query 75112 CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAG 75171 | || ||| ||||| ||| || || | ||||| ||||| ||||| || || | Sbjct 427438 CATTGCTAAAGTTCATCGCGAGGTTTTCGTTCACGATCCCGTCACTCGCGGCAAAGAACG 427497 Query 75172 CCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGT 75231 |||| || |||| ||| || || | ||| || || ||| |||| || | | Sbjct 427498 CCAGCACATGCGTGATGAAGAAACGTTCGTTGTCGGTAAGCTTGACCCAGTCGCGTTGAT 427557 Query 75232 CCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAG 75291 | | |||| || | ||| || | |||||||| ||| | |||||||||||||| Sbjct 427558 CGTGCACCAAGTCTAGCTCTTCCGCTGTCCAGAAGCTCGCTTCCGCCTTTTTGTACATCT 427617 Query 75292 ACCACAAGTCAGGGTAATTGATTGGAAA 75319 ||||| ||| | || | ||| || || Sbjct 427618 CCCACACGTCGGCGTGTTGGATCGGGAA 427645 >seq26 Length=915853 Score = 134 bits (148), Expect = 2e-26 Identities = 228/328 (70%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 151999 AATATCCGTCGAGTCATAGGACT-CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATC 152057 || ||| |||| || ||| | || |||| ||| ||||| || || | || || || || Sbjct 570603 AAGATCAGTCGCGT-ATACGGCTGCAAATACGTAAAGATATACCGCGGACTTGCGGCGTC 570545 Query 152058 CTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTT 152117 |||||| ||| |||||||| ||||||||||| || || ||||||| || |||||| Sbjct 570544 CTTGCCGCCTTGGAGCCGCGTCCCAAACTGTCCGGACGGGACGAGGAGCGGGACGTTGTT 570485 Query 152118 GGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTG 152177 || || || || | ||| |||| || || |||||| | || ||||| ||||| Sbjct 570484 GGACCCGACAAAGTCCTGCGCCATGTTGACGATCGTGGATAGGAGGGAGGCTTCCCCGTG 570425 Query 152178 GTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGT 152237 |||||||||||| ||||| ||| ||| ||||| | ||| || || ||||| || | Sbjct 570424 GTGATACGCCGTGTGCTCGGCGCAGTAACCCGCGAGCTGGGCGACTTTCATTTCTGCAAC 570365 Query 152238 CAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCAC 152297 ||||| | | || || | | ||| |||||||| || || || | ||||| | Sbjct 570364 CAGGTGCCGGCGAAAGCACGCAAAGAGCACTTTGCGCTGCGACGGCTTGAGGCCGTCAAT 570305 Query 152298 CACGTGAGGAATCGAACGCTTGATGTCC 152325 |||| || || || || || ||||| Sbjct 570304 CACGCTCGGGATGGACCGGGTGTTGTCC 570277 Score = 116 bits (128), Expect = 4e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 152912 CATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTG 152971 |||| | ||||| ||| | | ||||| || || |||||| | ||| || || || | Sbjct 569643 CATTCTTGGTCAGCTGCGTGTCAGTGGCGTCGCGGACATTGAGGAACTTGCCGCGCAGGG 569584 Query 152972 GAAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCG 153031 |||| || ||| | | || |||||| || || ||||| ||||| | || || || || | Sbjct 569583 GAAAAACACCGTAGGTGTCGCGGCCGACGACACTCAGCCCGGCCACGGCGAGCGCCTTGG 569524 Query 153032 CCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGT 153091 ||||||| || ||||| | ||| ||||| |||| | | ||| ||| || ||||||| Sbjct 569523 CCGAGTCCCCTTCGGTTAGAATCAGCGTGCAGTTGGGCGACTTGGCAGTGCCCGCCCAGT 569464 Query 153092 TGGCGTCGTCAAGCTTGGG 153110 ||||||| || |||||||| Sbjct 569463 TGGCGTCCTCGAGCTTGGG 569445 Score = 113 bits (124), Expect = 5e-20 Identities = 203/297 (68%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || || || || | ||||| || |||||||| || || ||||| || || ||| Sbjct 570573 GTAAAGATATACCGCGGACTTGCGGCGTCCTTGCCGCCTTGGAGCCGCGTCCCAAACTGT 570514 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||| | | ||| | |||||||| || ||||||| || |||| |||||| Sbjct 570513 CCGGACGGGACGAGGAGCGGGACGTTGTTGGACCCGACAAAGTCCTGCGCCATGTTGACG 570454 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| | ||||| || || || |||||||||||||| ||||| || ||| ||| Sbjct 570453 ATCGTGGATAGGAGGGAGGCTTCCCCGTGGTGATACGCCGTGTGCTCGGCGCAGTAACCC 570394 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 || ||||| || || ||||| |||| ||||| | | ||| ||| | | ||| Sbjct 570393 GCGAGCTGGGCGACTTTCATTTCTGCAACCAGGTGCCGGCGAAAGCACGCAAAGAGCACT 570334 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTCC 117601 |||||||| ||||| || || || |||| ||||| || || || ||||| Sbjct 570333 TTGCGCTGCGACGGCTTGAGGCCGTCAATCACGCTCGGGATGGACCGGGTGTTGTCC 570277 >seq9 Length=1715687 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/173 (73%), Gaps = 10/173 (6%) Strand=Plus/Minus Query 124676 CTTGCGCGTCACAAAC-TCGGAACCGCGTCGC-TCAGACTC--GTGGTTGAACAGAATGC 124731 ||||||||| ||||| |||| || |||| || ||||| ||||||||||| ||||| Sbjct 1424873 CTTGCGCGTGACAAATGTCGG----GCCTCGCCTCGGACTCTCGTGGTTGAACAAAATGC 1424818 Query 124732 CAGTACACGCAA-ACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAG 124790 | || ||| ||| |||| |||||| || ||||| || | |||||| || | | Sbjct 1424817 C-GTTCACACAATACATGTCGTACGCTTCACGGTAATTGACCACCATCCAGAACGCGTAC 1424759 Query 124791 AGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTG 124843 |||||| |||||||| || ||| |||| |||||| |||| ||| || || Sbjct 1424758 TGCTTGGCGACGCCATACGGTGATCGCGGGTGGAATGGCGTGTCTTCGTTCTG 1424706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212709863800