Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq26 143 3e-29 seq1 143 3e-29 seq76 138 1e-27 seq27 89.7 6e-13 >seq26 Length=915853 Score = 143 bits (158), Expect = 3e-29 Identities = 299/443 (67%), Gaps = 2/443 (0%) Strand=Plus/Plus Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022 |||||||| || |||| |||||||||||||| || |||||||| ||| | | || Sbjct 570287 CGGTCCATCCCGAGCGTGATTGACGGCCTCAAGCCGTCGCAGCGCAAAGTGCTCTTTGCG 570346 Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082 ||| | | ||||| || ||||| || || ||||| |||| ||| || Sbjct 570347 TGCTTTCGCCGGCACCTGGTTGCAGAAATGAAAGTCGCCCAGCTCGCGGGTTACTGCGCC 570406 Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCT 32142 ||||| ||||| ||||||||||| || || || |||| ||| || |||||| | || Sbjct 570407 GAGCACACGGCGTATCACCACGGGGAAGCCTCCCTCCTATCCACGATCGTCAACATGGCG 570466 Query 32143 CAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACC 32202 ||| |||||||||| | || ||| | | |||| || || |||||||||||||| Sbjct 570467 CAGGACTTTGTCGGGTCCAACAACGTCCCGCTCCTCGTCCCGTCCGGACAGTTTGGGACG 570526 Query 32203 CGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCA-CC 32261 |||||| || |||||||| || || || | || || ||||| || | | ||| || Sbjct 570527 CGGCTCCAAGGCGGCAAGGACGCCGCAAGTCCGCGGTATATCTTTACGTAT-TTGCAGCC 570585 Query 32262 TTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGA 32321 | ||||| ||| || | || | ||||| || | || | ||| | || || Sbjct 570586 GTATACGCGACTGATCTTTCCCGCGGCCGACGAGCCGCTCCTGGACTACGTCTACGACGA 570645 Query 32322 CGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGG 32381 ||| || ||||| |||||| ||| ||| | || || || | | ||||| || Sbjct 570646 CGGGGCGCCCGTCGAACCGGTGCACTATGTTCCCATCCTCCCCTTGTTGCTCGTGAATGG 570705 Query 32382 TGCAGAAGGCATCGGAACGGGGT 32404 || || |||||||| || |||| Sbjct 570706 CGCCGACGGCATCGGGACAGGGT 570728 Score = 116 bits (128), Expect = 4e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 31207 CCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATT 31266 || |||||||| |||||||||||||| || || |||||||| | | |||||||| ||| Sbjct 569445 CCCAAGCTCGAGGACGCCAACTGGGCGGGCACTGCCAAGTCGCCCAACTGCACGCTGATT 569504 Query 31267 ATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGC 31326 | ||||| || |||||||| |||||||| || | || || ||||||| || || ||| Sbjct 569505 CTAACCGAAGGGGACTCGGCCAAGGCGCTCGCCGTGGCCGGGCTGAGTGTCGTCGGCCGC 569564 Query 31327 AATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCC 31380 | | | ||| || ||||| || || |||||| | || || || |||||| Sbjct 569565 GACACCTACGGTGTTTTTCCCCTGCGCGGCAAGTTCCTCAATGTCCGCGACGCC 569618 >seq1 Length=2817317 Score = 143 bits (158), Expect = 3e-29 Identities = 725/1128 (64%), Gaps = 58/1128 (5%) Strand=Plus/Plus Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064 ||||| | ||| || | | ||| || | || | || || || |||||||| |||||| Sbjct 1823959 ACCGTGAACTGGATCGCATCGGCTTTCGGGCGTGAGCGGAGGTAATACATGCCGGTCTTG 1824018 Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCC 80124 || || |||||| |||| | |||||| || ||||||| || || || ||| | Sbjct 1824019 AGCCCACGCTTCCACGCGTAAAAGTGCATCGACGTGAGCTT-GCTGATGCTTGGGTCTGC 1824077 Query 80125 -ATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTC 80183 ||| | ||||| || || || |||||||| || || || || || |||| || Sbjct 1824078 GATGTGCACGTTCATGGATTGGCTTTGGCAGATGAATGCGCCTCGGTCGGCAGCCAGGTC 1824137 Query 80184 AATAATTGACTTTTGTGGAATTTCCCATACTGTACGATACACCTTACGAAGCTCCTCTGG 80243 | | |||||| |||||||| || || ||||| | | | | | || Sbjct 1824138 GAGCACGACCTTTTGCTTGATTTCCCACACAGTCTTGTACACTTCCTTCACATGCGCAGG 1824197 Query 80244 AAT-GTCCAGA--TTTTGCACACTGCCACCGTCCTTTACAATTTGATTTTTCAATTCAGA 80300 || | | || || ||||||||||| | ||| | | || || || | || | Sbjct 1824198 GATCGACGCGACGTTCTGCACACTGCCGCGGTCGTGCAAGATCTGGTTGCGGACGTCCGC 1824257 Query 80301 CGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGGTGCTTGTT---AATCATGACAAA 80357 |||| | || ||| || || |||| | || |||||| |||| ||| | Sbjct 1824258 GTTCCACAGGCCGAGCGAAATGAGCTCCTTCATCAAGTACTTGTTCACAATCGTGA---A 1824314 Query 80358 CTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTT 80417 || || || | | || || |||| ||| | ||| | ||||| | | |||||| Sbjct 1824315 TTCACCTGCCAAGACACGGCGGCTGTACATGTTGCTCGTGAAGGGCTCGATGGACTCGTT 1824374 Query 80418 GTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCG 80477 ||| || |||||||| || || ||| || ||||||||| | | || || ||||||| Sbjct 1824375 GTTGCCAAGGATCTGGGCGGTCGACGCGGTAGGCATCGGGGCCAACAGCAACGAATTCCT 1824434 Query 80478 CAGGCCGTGCTT-----CTTGA--TATCCTCGCG--CAAATCTGACCAAAAATCAACCCC 80528 | |||||||| ||||| | || || | | |||| ||| || | | Sbjct 1824435 GATGCCGTGCTGAGCGACTTGAGCTTTCAACGTGGCCCAATC---CCA-----CAGCGGC 1824486 Query 80529 AACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCG 80584 ||| || || |||||| |||| ||| || | |||| | ||| || ||||| Sbjct 1824487 GACGGGGTAACATTCCACATATCGTACTGGAACAGCCCCTTGCTTACG--GGCGACCCGT 1824544 Query 80585 CGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGAC---TCCATAAGGGCCG 80641 | |||| ||||| || || | || || || || || || ||||| ||| | Sbjct 1824545 GGTACGTTTCGTAAGGCCCTTGCGCTTTTGCGAGTTCCATGGAAGTTTCCAT---GGCGG 1824601 Query 80642 CGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCG--TCGAA 80699 |||| || || |||||||| | ||||| || || | || |||| || ||||| Sbjct 1824602 CGTGGTAGATCGTCTCAAAGATCTGTTGGTTCA-ACAGCTTGGCT-TGGGGCGACTCGAA 1824659 Query 80700 CGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCG 80759 || || ||||| | || ||| | || ||||| || || || || ||| |||||||||| Sbjct 1824660 CGCGAATCCCATGAGGATAAACGCATCCGCCAGCCCTTGGACACCAATGCCGATCGGGCG 1824719 Query 80760 GTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGC 80818 ||| ||| |||| | | || || | || || ||||| |||| |||||||| Sbjct 1824720 GTGCCGCATGTTGCTGTTGCGCG-CTTCTTCGATGGGGTAGTAGTTGACGTCGATGACCT 1824778 Query 80819 GGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATG-AAGTTTCTGAAAGTCGAATTGG 80877 ||||| |||| || || ||| | | | || |||| | || |||||||| | Sbjct 1824779 TGTTCAAGTTGGTCGTGACCACCTTGGCGATCTTGTGCAAGTGT-TGGAAGTCGAACACG 1824837 Query 80878 TTCCCCTTCACAAATGCC--GGAAGGCTC-AGGGACGCCAGATTGCACACGGCCACCTCT 80934 || ||| ||| | ||| || | | ||| |||| ||||||||||| || || Sbjct 1824838 ---CCGTTCTCAACAAACTTGGAGAGCGCGATGGATGCCAAGTTGCACACGGCGACTTCG 1824894 Query 80935 TCA--GCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCA 80992 || || |||| ||||| |||||| |||||| || || || || || || | Sbjct 1824895 TCTTTGCTCGTGTA--CTCGATGATTTCGCAGCACAAGTTGCTCGATTTGATCGTGCCGA 1824952 Query 80993 GGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGG 81052 |||| | ||||| |||||| ||||||| || |||||||| ||||||||||||| || | Sbjct 1824953 GGTTCTGTTGGTTGGACTTGCCGTTGCACGCATCCTTGTACAACATGTACGGGGTGCCTG 1825012 Query 81053 TCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGA 81100 | || || || || | | |||||| ||| | | ||||||||| Sbjct 1825013 TTTCTACTTGCGATTCCAAGATGGCAAACCACAGTTGCTGCGCCTTGA 1825060 Score = 93.3 bits (102), Expect = 5e-14 Identities = 333/515 (65%), Gaps = 22/515 (4%) Strand=Plus/Plus Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGGCCACCC--- 81384 ||||| || ||||| || |||| |||| ||| | ||||||||| || ||||| Sbjct 1825330 ATGTCAGCGTGCCAAGGTTCCAAGTACATGGCAAACGACCCCTTTCGCTTTCCACCGCCT 1825389 Query 81385 TGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGAC 81444 |||| ||| |||||||| || |||| || || || | ||| || ||||| || | || Sbjct 1825390 TGGTCGACATAACGGGCCGTGTCGTTGAACACGCGAAGCATGGGAATGATCCCGTTCGAA 1825449 Query 81445 TGACCGTTCGTACCCACGATACGCGACCCCT--TGGCGCGCACCTTGCTGATTGAAAGAC 81502 |||||||| || ||| | | | | ||||||| | ||| ||| | || Sbjct 1825450 GACCCGTTCGTTCCT-CGA-ATGTAGCTGTTCGTGGCGCGGATGTTGTGGATGTTCACAC 1825507 Query 81503 CGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCT 81562 |||| ||||| | |||||| ||||| || || |||| || || ||||| || | Sbjct 1825508 CGATTCCACCAGCCCACTTGGAAATGCACGCGCAGTTTTTCAATGTGTCGTAAATGCCTT 1825567 Query 81563 CGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGC 81622 | || || | ||||||| ||||| || || || | ||||||| | || Sbjct 1825568 CAATCGAGTCGTCTTTCATGGACAGCAAAAAGCACGACGAGAGTTGAGGGCGCGGCGTGC 1825627 Query 81623 CGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGG 81682 |||||||||||| || || || ||||| | || || | ||||| || |||| Sbjct 1825628 CGGCATTGAACAACGTGGGTGTTGCGTGGGTAAAGTACAATTGGGACATGTACTCGTAGG 1825687 Query 81683 TTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGT 81742 | | |||| || || || ||| || || | ||| |||||||||| ||||| Sbjct 1825688 TGGTCAAGACGGACTCGATGTCATCTTTGTGGATGCCCACAGCCACACGCATAATCATGT 1825747 Query 81743 ACTGGGG-CGT---CTCGCCT--GCGTT---------CAGGTACATCTTCTGCAAAGTCT 81787 ||||| ||| | | ||| |||| ||||||| ||| | | ||||| Sbjct 1825748 GTTGGGGTCGTTCACACACCTTGTCGTTTACGCGGAGCAGGTACGACTTTTCGAGAGTCT 1825807 Query 81788 TGATGCCGAAGTAACCGAACCCGTAGTCGCGTTCG 81822 ||| ||| ||||| || || || |||| || ||| Sbjct 1825808 TGAAGCCAAAGTAGTCGTACTCGAAGTCACGGTCG 1825842 >seq76 Length=128956 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || ||||||||||| ||||| || || || ||| | Sbjct 45101 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATTACGCTCGACGTGGAGCCGTCC 45042 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| ||| | ||| || |||||||||||||| || |||||||| || ||| Sbjct 45041 GACTCGATTGACAATGTCAAGCAGAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 44982 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || || || || ||||| || ||||| | ||||||| || || | ||| ||||| || Sbjct 44981 CAACGACTCATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGCACGTTGAGC-GACTACAA 44923 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||| || || || ||| | || | || || |||||||| Sbjct 44922 TATCCAGAAGGAGTCGACCCTGCATTTGGTTCTTCGCCTCCGCGGTGG 44875 >seq27 Length=843962 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||||||| | || || || || || || | || || || || Sbjct 479755 ATGCAAATCTTCGTCAAGACGTTGACGGGTAAAACCATCACGTTGGATGTGGAACCATCC 479814 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || ||||| || || ||||||||||| || || || || || ||| Sbjct 479815 GACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCAG 479874 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || || || || ||||| || |||||| | || |||| || || | ||| ||||| || Sbjct 479875 CAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACGTTGAGC-GACTACAA 479933 Query 27585 TGTCCAAAAGGAATCCAC 27602 ||||||||||||| || Sbjct 479934 CATCCAAAAGGAATCGAC 479951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306971008720