Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq76 159 3e-34 seq27 138 1e-27 seq11 138 1e-27 >seq76 Length=128956 Score = 159 bits (176), Expect = 3e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| || || || ||||||||| | ||||| || || ||||| |||| Sbjct 45103 CCATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATTACGCTCGACGTGGAGCCGT 45044 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||||||||||||| | ||||| || || ||||| ||||| ||||| || || || |||| Sbjct 45043 CCGACTCGATTGACAATGTCAAGCAGAAGATTCAGGACAAGGAAGGGATTCCTCCGGATC 44984 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTAC 27164 | || || | || | |||||||| || ||||| || | || |||| ||| ||| Sbjct 44983 AGCAACGACTCATCTTTGCCGGCAAGCAGTTGGAGGA-TGGCCGCACGTTGAGCGACTAC 44925 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || |||||||||||| | ||||||||| | || | || ||||| Sbjct 44924 AATATCCAGAAGGAGTCGACCCTGCATTTGGTTCTTCGCCTCCGCGGTGG 44875 Score = 100 bits (110), Expect = 2e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| || || || ||||||||| | ||||| || || ||||| |||| Sbjct 87593 CCATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATTACGCTCGACGTGGAGCCGT 87534 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGA 27088 ||||||||||||| | ||||| || || ||||| ||||| || Sbjct 87533 CCGACTCGATTGACAATGTCAAGCAGAAGATTCAGGACAAGGA 87491 >seq27 Length=843962 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || || || |||| || || | || || | || |||||||| | Sbjct 479753 CCATGCAAATCTTCGTCAAGACGTTGACGGGTAAAACCATCACGTTGGATGTGGAACCAT 479812 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||||||||| || | || || ||||| || || ||||| |||||||| || || |||| Sbjct 479813 CCGACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCCCCTGATC 479872 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTAC 27164 | || || | || | |||||||| ||||||||||| | || |||| ||| ||| Sbjct 479873 AGCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGA-TGGCCGCACGTTGAGCGACTAC 479931 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| |||||||| || ||||| | || |||| ||||| Sbjct 479932 AACATCCAAAAGGAATCGACCTTGCACTTGGTGCTCCGCCTGCGTGGTGG 479981 >seq11 Length=1510989 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| | || || || || ||||| || || Sbjct 1070143 ATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGCTGGACGTGGAGCCTTCG 1070202 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||||||||| || |||||||| |||||||| || || || || Sbjct 1070203 GACTCGATCGACAACGTCAAACAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 1070262 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||||| || || | || ||||| || | ||||| | || |||| ||| ||||| Sbjct 1070263 CAGCGCTTGATCTTTGCGGGCAAGCAGCTCGAAGA-TGGCCGCACGTTGAGCGACTACAA 1070321 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| |||||||| ||||| || || |||||| | || |||| || || Sbjct 1070322 CATCCAAAAGGAATCGACGTTGCACTTGGTTCTCCGCCTGCGTGGGGG 1070369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915785053120