Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq11 143 6e-29 seq27 138 3e-27 seq76 131 4e-25 >seq11 Length=1510989 Score = 143 bits (158), Expect = 6e-29 Identities = 154/201 (77%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 || || || ||||||||||| || || | ||| | | | |||||||| ||||||||||| Sbjct 1070339 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAACG-TGCGGCCATCTTCGAGCTGCTTGCC 1070281 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || ||||| | ||| || |||||||| || | ||||||||||| |||||||||||||| Sbjct 1070280 CGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGTTT 1070221 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||||| ||||| | ||| || || || || || ||||| ||||| || || | ||| Sbjct 1070220 GACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTCCCAGTCAAAGT 1070161 Query 211097 CTTTACAAACACCTGCATTTT 211117 ||| || || | |||||| || Sbjct 1070160 CTTGACGAAAATCTGCATATT 1070140 >seq27 Length=843962 Score = 138 bits (152), Expect = 3e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 || || || ||||||||||| || || | ||| | | | |||||||||| |||||||| Sbjct 479951 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAACG-TGCGGCCATCTTCCAATTGCTTGCC 479893 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || ||||| |||||||| || ||||| || | ||||||||||||||||||||||| || Sbjct 479892 GGCAAAGATGAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTTGCTT 479833 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 |||||| ||||| | ||| || ||| || || | ||||| || || ||||| | || Sbjct 479832 CACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTACCCGTCAACGT 479773 Query 211097 CTTTACAAACACCTGCAT 211114 ||| || || | ||||| Sbjct 479772 CTTGACGAAGATTTGCAT 479755 >seq76 Length=128956 Score = 131 bits (144), Expect = 4e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTG 210970 || || || ||||| || ||||| || || || | ||| | | | ||||| |||| ||| Sbjct 44899 TGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTCAACG-TGCGGCCATCCTCCAACTG 44957 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| || ||||| || ||||| || || ||||||| |||||||||||||| ||||| Sbjct 44958 CTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTT 45017 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || || || | ||| || || || ||||| || || ||||| || || Sbjct 45018 CTGCTTGACATTGTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTCTTGCCGGT 45077 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| | |||||| Sbjct 45078 GAGGGTCTTGACAAAGATCTGCAT 45101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159144856363565