Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq11 109 4e-19 seq76 95.1 8e-15 seq27 93.3 3e-14 >seq11 Length=1510989 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || || | || || || || ||||| || || || || | Sbjct 1070140 AATATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGCTGGACGTGGAGCCT 1070199 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||| | | || | | |||||||| || ||||| ||||| | ||||| || Sbjct 1070200 TCGGACTCGATCGACAACGTCAAACAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGAC 1070259 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| || || ||||| ||||| || || ||||| | ||||| || |||| ||| Sbjct 1070260 CAGCAGCGCTTGATCTTTGCGGGCAAGCAGCTCGAAGATGGCCGCACGTTGAGCGACTAC 1070319 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| ||||| || || || || || || ||| Sbjct 1070320 AACATCCAAAAGGAATCGACGTTGCACTTGGTT 1070352 >seq76 Length=128956 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || || || ||||| || || | | Sbjct 45101 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATTACGCTCGACGTGGAGCCGTCC 45042 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | |||| | | || || || ||| ||||| ||||| | || || ||||| Sbjct 45041 GACTCGATTGACAATGTCAAGCAGAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 44982 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || ||||||||||| || |||| || | ||||| || |||| ||||| Sbjct 44981 CAACGACTCATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGCACGTTGAGCGACTACAAT 44922 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| || | ||||| ||| Sbjct 44921 ATCCAGAAGGAGTCGACCCTGCATTTGGTT 44892 >seq27 Length=843962 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | ||||| ||||| ||||| | || || || | | Sbjct 479755 ATGCAAATCTTCGTCAAGACGTTGACGGGTAAAACCATCACGTTGGATGTGGAACCATCC 479814 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | || | | || ||||| || ||||| ||||| | || || ||||| Sbjct 479815 GACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCAG 479874 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || ||||||||||| ||| ||||||| | ||||| || |||| |||||| Sbjct 479875 CAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACGTTGAGCGACTACAAC 479934 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| || || || || || || || Sbjct 479935 ATCCAAAAGGAATCGACCTTGCACTTGGT 479963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007618524348