Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq27 149 1e-30 seq11 149 1e-30 seq85 141 2e-28 seq76 120 7e-22 seq23 113 1e-19 seq280 91.5 4e-13 seq115 84.2 5e-11 seq26 84.2 5e-11 >seq27 Length=843962 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||||| ||||| ||| ||| || | |||||||| | ||||| || Sbjct 479951 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCCAATTGCTTGCCG 479892 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| || ||||| || || || || || ||||||||||| ||||||||||||||| Sbjct 479891 GCAAAGATGAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTC 479832 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||| | ||| || | |||||| || |||||||| || || |||||||| || Sbjct 479831 ACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTACCCGTCAACGTC 479772 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 479771 TTGACGAAGATTTGCAT 479755 >seq11 Length=1510989 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||||| ||||| ||| ||| || | |||||||| |||||||| || Sbjct 1070339 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCGAGCTGCTTGCCC 1070280 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | || || ||||| ||||| || ||||||||||||||||||||||| || Sbjct 1070279 GCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGTTTG 1070220 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||| | ||| || | |||||||| | |||||| ||||| || |||||||| Sbjct 1070219 ACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTCCCAGTCAAAGTC 1070160 Query 225697 TTTATGAACACTTGCATTTT 225716 || | ||| | ||||| || Sbjct 1070159 TTGACGAAAATCTGCATATT 1070140 >seq85 Length=132271 Score = 141 bits (156), Expect = 2e-28 Identities = 101/116 (87%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || |||||||||||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct 12873 AAAATTTGACCATCAGTAATAGAAATAACATTTGTAGGAATATAAGCAGAAACATCTCCA 12932 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | ||||||||| || |||| || |||||||||| |||| |||| Sbjct 12933 GCTTGAGTTTCAATAACAGGTAAAGCAGTTAAAGAACCACCACCAATATTTATATT 12988 >seq76 Length=128956 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || || || |||| |||||| ||| ||| || | ||||| || | |||| Sbjct 44899 TGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTCAACGTGCGGCCATCCTCCAACTGC 44958 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| |||||||| || || || ||||| ||||||||||| || ||||| Sbjct 44959 TTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTTC 45018 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||| ||| || || | ||| || | |||||||| | ||| || |||||||| || Sbjct 45019 TGCTTGACATTGTCAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTCTTGCCGGT 45077 >seq23 Length=920215 Score = 113 bits (124), Expect = 1e-19 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| || | ||||| ||| Sbjct 237516 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAAAGG-CAG 237458 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 ||||| ||||||| ||||||| |||||||||||||| || ||| Sbjct 237457 CAGTGAGGAATATTGGACAATGAGCGAAAGCTTGATCCAGCAAT 237414 >seq280 Length=14932 Score = 91.5 bits (100), Expect = 4e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 ||| |||||||| || | |||| | || ||||||||||||| ||||||||||| | | Sbjct 549 AGGATTGGTAAGGTTTTGCGCGTATTGTCGAATTAAACCACATGCTCCACCGCTTGTGTA 608 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| | || | ||||| ||| | || Sbjct 609 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATTATACTCTTCAGGCGGAGTGCTT 668 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 669 AACGCGTTAGCT 680 >seq115 Length=78495 Score = 84.2 bits (92), Expect = 5e-11 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||| | ||||||||||| || ||||||| |||||| | | ||| | || || ||||| Sbjct 19218 TTCACGGTGACCAAAAAACCAAAATAAATATTGATATAAATTTGGAACTCCACCACCTGA 19277 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 ||||||||| ||| |||||| |||||| ||| ||||||| Sbjct 19278 TGGATCAAATAAG-AAGTATTCAAATTTATATATGTTAAAA 19317 >seq26 Length=915853 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 6766 CTTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAGGGCA 6824 ||||| | ||||||||||||| | ||||||| ||||||||||| | || | ||| |||| Sbjct 717038 CTTGAAA-AATGATCAGCCACTATAGGACTGAGAAACGGCCCAAATTTTTTTAAA-GGCA 716981 Query 6825 GCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| ||||||| || |||| ||||| |||| || || ||| Sbjct 716980 GCAGTGAGGAATATTGGAGAATGAGCGAACGCTTAGTCCAGCAAT 716936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192523850653814