Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq27 82.4 6e-11 >seq27 Length=843962 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/215 (69%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| |||||| || ||||| ||||| || ||||| ||| || || | |||||| Sbjct 479964 CACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTC 479905 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 |||||| ||||| ||| | || || | ||| || || ||| | |||||| ||||| Sbjct 479904 CAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTG 479845 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT-----TCGACGGTAATA 101203 || ||||| ||||| | | | | || || ||| | ||| || | || || Sbjct 479844 GATCTTTTGCTTCACGTTGTCGATCGAGTC---GGA--TGGTTCCACATCCAACGTGATG 479790 Query 101204 GTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||| |||||||| || || | || |||||||| Sbjct 479789 GTTTTACCCGTCAACGTCTTGACGAAGATTTGCAT 479755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409658398491579