Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq18 149 5e-31 >seq18 Length=1130244 Score = 149 bits (164), Expect = 5e-31 Identities = 364/549 (66%), Gaps = 2/549 (0%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 || |||||||| || || |||| ||||||||| | ||| |||||||| || || | Sbjct 427068 AAGCACGCAAAGTCGCAGTGCAGACCTTCGTCGCGAGAAATGAGTTCGTTCGAGAAGGAC 427127 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 || || ||||||| ||||| ||| || ||||| || || | | || ||||| || ||| Sbjct 427128 AAACCCGGCATTAGACCTCGCTTCTTGAGCCAGAAGATGGAGCAGAACGACCCCGAGAAG 427187 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTC 4723 || |||||||| || |||||||| || || | || || | | ||| |||| | Sbjct 427188 AAGATGCCTTCGACAGCGGCAAAGGCAACGATACGTTCAGCGTAGGCAGCACGCTTATTG 427247 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | | ||| || || |||||| | ||||| || || || || |||| || || Sbjct 427248 TCGCA-CCACTTCAAAGCCCAGGTGGCTTTGCGTCGGACACAGGGGATCGTGTCAATGGC 427306 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 | | ||||| | || | || || ||||| || || || || Sbjct 427307 ACGCAGGACCCGGTCCTTTTCCGTGGCATCCTTGATGTACGTGTCGATGAGGAGCGAGTA 427366 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 || |||||| || || || || || |||||||| || ||||| ||||| | ||||| | Sbjct 427367 CACTTCAGAGTGAATGTTCTCAATGGCAATCTGGAACCCGTAGAAGCACCGGGCTTCAGG 427426 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 ||||| ||||| || | ||| | | | ||||||||| || || |||||||| || Sbjct 427427 CACTTGTACTTCATTGCTAAAGTTCATCGCGAGGTTTTCGTTCACGATCCCGTCACTCGC 427486 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 ||||| ||||||| ||||| | || ||| | |||||| |||| || ||| Sbjct 427487 GGCAAAGAACGCCAGCACATGCGTGATGAAGAAACGTTCGTTGTCGGTAAGCTTGACCCA 427546 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 || | | ||| | || || | ||||| | ||||| || ||||||||| || Sbjct 427547 GTCGCGTTGATCGTGCACCAAGTCTAGCTCTTCCGCTGTCCAGAAGCTCGCTTCCGCCTT 427606 Query 5084 TTTGTACAT 5092 ||||||||| Sbjct 427607 TTTGTACAT 427615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047096555173