Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq11 203 7e-47 seq27 168 1e-36 seq97 152 1e-31 seq4 152 1e-31 seq76 123 5e-23 seq1 104 5e-17 >seq11 Length=1510989 Score = 203 bits (224), Expect = 7e-47 Identities = 186/234 (79%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||||||||| || |||| || ||||| ||| ||||||||||||||||| Sbjct 1070370 ACCCCCACGCAGGCGGAGAACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCT 1070311 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||||||||| || || || || || ||||||||||| || || |||||| ||| Sbjct 1070310 CAACGTGCGGCCATCTTCGAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGG 1070251 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||||||||||||| ||| ||| | ||||| | |||||||| || || Sbjct 1070250 GATGCCTTCCTTGTCTTGGATCTTTTGTTTGACGTTGTCGATCGAGTCCGAAGGCTCCAC 1070191 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT-TTTCA 283104 || || ||||| ||||| || ||||||||||| ||||| |||||||| ||||| Sbjct 1070190 GTCCAGCGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCATATTTCA 1070137 >seq27 Length=843962 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || |||| || || || ||| ||||||||||||||||| Sbjct 479982 ACCACCACGCAGGCGGAGCACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCGCT 479923 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||||||||| || | ||| || ||||||||||| | ||||| || ||| || Sbjct 479922 CAACGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGG 479863 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| ||||||||| || ||| | ||||| | ||| || | ||| || Sbjct 479862 GATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCAC 479803 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| || ||||||||||| ||||| ||||| || ||||| Sbjct 479802 ATCCAACGTGATGGTTTTACCCGTCAACGTCTTGACGAAGATTTGCAT 479755 >seq97 Length=16286 Score = 152 bits (168), Expect = 1e-31 Identities = 143/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 317020 TCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTG 317079 ||||| | |||||||||||||||||||||||| ||||||| | ||||| ||||||||| Sbjct 6137 TCCTTGGACGGGAACCCTTCCAACTGACCGTTTGCAATCGCACGCATCAACGTCGACTTG 6196 Query 317080 CCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTG 317139 || || || ||||| ||||| | ||| ||||| | ||||| ||||| | ||||| | | Sbjct 6197 CCCGCGCCGTTGGGCCCGCACAAACCGTACCGGTGCCCCTTTTTCAGCTGCAAACGCGCG 6256 Query 317140 TTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199 ||||| || | |||| ||||||| || |||| || || || || || |||| ||| ||| Sbjct 6257 TTGTTGAGCAAAATCATACCACCGTACGCCAACGAAAATTCGCAGTCGCACAAGTCTTCG 6316 Query 317200 CC 317201 || Sbjct 6317 CC 6318 Score = 152 bits (168), Expect = 1e-31 Identities = 143/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 317020 TCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTG 317079 ||||| | |||||||||||||||||||||||| ||||||| | ||||| ||||||||| Sbjct 11665 TCCTTGGACGGGAACCCTTCCAACTGACCGTTTGCAATCGCACGCATCAACGTCGACTTG 11606 Query 317080 CCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTG 317139 || || || ||||| ||||| | ||| ||||| | ||||| ||||| | ||||| | | Sbjct 11605 CCCGCGCCGTTGGGCCCGCACAAACCGTACCGGTGCCCCTTTTTCAGCTGCAAACGCGCG 11546 Query 317140 TTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199 ||||| || | |||| ||||||| || |||| || || || || || |||| ||| ||| Sbjct 11545 TTGTTGAGCAAAATCATACCACCGTACGCCAACGAAAATTCGCAGTCGCACAAGTCTTCG 11486 Query 317200 CC 317201 || Sbjct 11485 CC 11484 Score = 104 bits (114), Expect = 5e-17 Identities = 103/132 (78%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 316160 ATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAA 316219 |||| ||||||||||| || ||||||| ||||||||||| || | ||||| ||| | Sbjct 5280 ATTCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGGTTCGCCGTCAAGTCCA 5339 Query 316220 GATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGAT 316279 || || || ||||| ||||| |||||||| |||||||| |||| |||||| || | Sbjct 5340 AGTGCTCTTCAATGTGATGGAACGCGTGCTGCGCCACGTACGCAAAACGCATCGACGGGT 5399 Query 316280 GCTTCCA-AACG 316290 ||||||| |||| Sbjct 5400 GCTTCCACAACG 5411 Score = 104 bits (114), Expect = 5e-17 Identities = 103/132 (78%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 316160 ATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAA 316219 |||| ||||||||||| || ||||||| ||||||||||| || | ||||| ||| | Sbjct 12522 ATTCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGGTTCGCCGTCAAGTCCA 12463 Query 316220 GATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGAT 316279 || || || ||||| ||||| |||||||| |||||||| |||| |||||| || | Sbjct 12462 AGTGCTCTTCAATGTGATGGAACGCGTGCTGCGCCACGTACGCAAAACGCATCGACGGGT 12403 Query 316280 GCTTCCA-AACG 316290 ||||||| |||| Sbjct 12402 GCTTCCACAACG 12391 >seq4 Length=2763071 Score = 152 bits (168), Expect = 1e-31 Identities = 143/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 317020 TCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTG 317079 ||||| | |||||||||||||||||||||||| ||||||| | ||||| ||||||||| Sbjct 1861158 TCCTTGGACGGGAACCCTTCCAACTGACCGTTTGCAATCGCACGCATCAACGTCGACTTG 1861099 Query 317080 CCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTG 317139 || || || ||||| ||||| | ||| ||||| | ||||| ||||| | ||||| | | Sbjct 1861098 CCCGCGCCGTTGGGCCCGCACAAACCGTACCGGTGCCCCTTTTTCAGCTGCAAACGCGCG 1861039 Query 317140 TTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199 ||||| || | |||| ||||||| || |||| || || || || || |||| ||| ||| Sbjct 1861038 TTGTTGAGCAAAATCATACCACCGTACGCCAACGAAAATTCGCAGTCGCACAAGTCTTCG 1860979 Query 317200 CC 317201 || Sbjct 1860978 CC 1860977 Score = 104 bits (114), Expect = 5e-17 Identities = 103/132 (78%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 316160 ATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAA 316219 |||| ||||||||||| || ||||||| ||||||||||| || | ||||| ||| | Sbjct 1862015 ATTCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGGTTCGCCGTCAAGTCCA 1861956 Query 316220 GATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGAT 316279 || || || ||||| ||||| |||||||| |||||||| |||| |||||| || | Sbjct 1861955 AGTGCTCTTCAATGTGATGGAACGCGTGCTGCGCCACGTACGCAAAACGCATCGACGGGT 1861896 Query 316280 GCTTCCA-AACG 316290 ||||||| |||| Sbjct 1861895 GCTTCCACAACG 1861884 >seq76 Length=128956 Score = 123 bits (136), Expect = 5e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 ||||||| || |||||||| |||| ||| | || || || ||||| |||||||| Sbjct 44873 AACCACCGCGGAGGCGAAGAACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGC 44932 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 | ||||||||||||||| | || || ||||||||||| | ||||| || || | Sbjct 44933 TCAACGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAG 44992 Query 282991 GAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 |||| || |||||||| || ||||| ||| || || | || || | ||| || | || Sbjct 44993 GAATCCCTTCCTTGTCCTGAATCTTCTGC-TTGACATTGTCAATCGAGTCGGACGGCTCC 45051 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || ||||| || || | ||||| || || |||||||| Sbjct 45052 ACGTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 45101 >seq1 Length=2817317 Score = 104 bits (114), Expect = 5e-17 Identities = 237/354 (67%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 299491 AACGGGAAGTTCGACTTCGACGACCTTCGGAAAAACGTCAAAATCCTCGCGAAGAACCTT 299550 ||||| |||||||||| | || | | || | || ||| | || ||| ||| | Sbjct 1824842 AACGGCGTGTTCGACTTCCAACACTTGCACAAGATCGCCAAGGTGGTCACGACCAACTTG 1824783 Query 299551 GACAGGTCCATCGACGTCATGGCATACCCCATCAAAGAAGCGC-AGACATCGAACATGCT 299609 ||| | ||||||||||| ||||||||| ||||||||| ||| | ||||||| Sbjct 1824782 AACAAGGTCATCGACGTCAACTACTACCCCATCGAAGAAGCGCGCAACAGC-AACATGCG 1824724 Query 299610 GCGCCGCCCCATCGGCGTGGGGGTACAAGGACTTCAGGATGTGTTCTTCAAACTGAAGCT 299669 || |||||| |||||| | || || ||||| || ||||| ||| || || | Sbjct 1824723 GCACCGCCCGATCGGCATTGGTGTCCAAGGGCTGGCGGATGCGTTTATCCTCATGGGATT 1824664 Query 299670 CCCATTTGACTCTCCGGAGGCCAGGGATCTTAACCGGGAAATCTTCGAGCATATCTACTA 299729 | | || || || || | |||| | | |||| | ||||| ||| |||||| | Sbjct 1824663 CGCGTTCGAGTCGCCCCAAGCCAAGCTGTTGAACCAACAGATCTTTGAGACGATCTACCA 1824604 Query 299730 CGCTGCCGTTGAAGCGTCGGTAGAACTCGCGGAAATCCACGGGCCTCACCCCACCTTCGA 299789 ||| ||| | ||| | || | |||||||| || || |||||| || || | | | Sbjct 1824603 CGCCGCCATGGAAACTTCCATGGAACTCGCAAAAGCGCAAGGGCCTTACGAAACGTACCA 1824544 Query 299790 AGGGTCTCCTGCAAGTAAGGGCATCCTCCAATACCACTTGTGGGATGTTACCCC 299843 ||||| || | ||| ||||| | |||| ||| | ||||| |||||||||| Sbjct 1824543 CGGGTCGCCCGTAAGCAAGGGGCTGTTCCAGTACGATATGTGGAATGTTACCCC 1824490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046732749142574