Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq76 123 2e-23 seq27 116 3e-21 seq11 95.1 9e-15 >seq76 Length=128956 Score = 123 bits (136), Expect = 2e-23 Identities = 149/201 (74%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||| ||||| ||| | ||| | || |||| |||||| |||||||| Sbjct 44910 CTCCTTCTGGATATTGTAGTCGCTCAACGTGCGGCCATCCTCCAACTGCTTGCCGGCAAA 44969 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAAT 44263 ||| | || |||||||| | ||| | |||||||| ||| ||||||||||| || | Sbjct 44970 GATGAGTCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTTCTGCTTGACATT 45029 Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 || | || | ||||| | ||||| || | |||||| ||||| || ||||||||||| Sbjct 45030 GT--CAATCGAGTCGGACGGCTCCACGTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTG 45087 Query 44324 ACGAAGATTTGCATGATGTGA 44344 || ||||| |||||| || || Sbjct 45088 ACAAAGATCTGCATGGTGCGA 45108 >seq27 Length=843962 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||||||||| ||| | ||| | || |||| ||||| ||||||||| Sbjct 479945 TCCTTTTGGATGTTGTAGTCGCTCAACGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAG 479886 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | || |||||||| | || | |||||||| ||| ||||| ||||||| | Sbjct 479885 ATGAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTG 479826 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || | ||||| | |||||| |||| ||| || || || ||||| | ||||| ||| Sbjct 479825 TCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTACCCGTCAACGTCTTGACG 479766 Query 44327 AAGATTTGCATG 44338 |||||||||||| Sbjct 479765 AAGATTTGCATG 479754 >seq11 Length=1510989 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 ||||| | ||| | | |||| ||| | ||| ||||||||||||||||| ||| Sbjct 1070369 CCCCCACGCAGGCGGAGAACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTC 1070310 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 | ||| | || || |||||||| || ||||||||||| |||||||| || | || Sbjct 1070309 AACGTGCGGCCATCTTCGAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGCGGG 1070250 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| || ||||| || || | | | || | ||| | | ||||| Sbjct 1070249 ATGCCTTCCTTGTCTTGGATCTTTTGTTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 1070190 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||| || ||||| || || | ||||| ||||| || ||||| Sbjct 1070189 TCCAGCGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 1070143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988289668777