Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq11 145 2e-29 seq76 125 2e-23 >seq11 Length=1510989 Score = 145 bits (160), Expect = 2e-29 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 ||||| |||| | || |||||||| || ||| | || || || || ||||| || || | Sbjct 1070133 AGGTTGAAATA-TGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGCTGGACG 1070191 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 |||| || ||| | ||||| ||||||||||||||||| || ||||| ||||| |||| Sbjct 1070192 TGGAGCCTTCGGACTCGATCGACAACGTCAAACAAAAGATCCAAGACAAGGAAGGCATCC 1070251 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 | || |||||||| || | ||||| || || || |||||||||||||| | || | Sbjct 1070252 CGCCTGACCAGCAGCGCTTGATCTTTGCGGGCAAGCAGCTCGAAGATGGCCGCACGTTGA 1070311 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||| || ||| ||||||| ||||| || |||| |||| || Sbjct 1070312 GCGACTACAACATCCAAAAGGAATCGACGTTGCA-CTTGGTT 1070352 >seq76 Length=128956 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || || || ||||| ||||| || ||| Sbjct 45098 CAGATCTTTGTCAAGACCCTCACCGGCAAGACCATTACGCTCGACGTGGAGCCGTCCGAC 45039 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || ||||| || |||||||||||||| ||||| || |||||||| |||||| Sbjct 45038 TCGATTGACAATGTCAAGCAGAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAGCAA 44979 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| ||||| || ||| | || ||||| | || | ||| || || || Sbjct 44978 CGACTCATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGCACGTTGAGCGACTACAATATC 44919 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || |||||| | ||| Sbjct 44918 CAGAAGGAGTCGACCCTGCATTTGGTT 44892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723781630314