Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq27 114 1e-20 seq11 105 6e-18 seq76 95.1 1e-14 >seq27 Length=843962 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | ||||| |||| || ||||| || ||||| |||||| Sbjct 479984 CCACCACCACGCAGGCGGAGCACCAAGTGCAAGGTCGATTCCTTTTGGATGTTGTAGTCG 479925 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 | ||||| | || || | ||||||||||| || || ||||| || || || | | Sbjct 479924 CTCAACGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGG 479865 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 || | || ||||||||| ||| ||||||||| ||| | | | | |||| | || Sbjct 479864 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTTC-ACGTTGTCGATCGAGTCGGATGGTTC 479806 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| |||| ||| || ||||||||||||| |||||| ||||| || |||||| Sbjct 479805 CACATCCAACGTGATGGTTTTACCCGTCAACGTCTTGACGAAGATTTGCATG 479754 >seq11 Length=1510989 Score = 105 bits (116), Expect = 6e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || || || | |||| |||| ||| ||||| || ||||| ||||| Sbjct 1070373 ACCACCCCCACGCAGGCGGAGAACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTC 1070314 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 | | ||||| | || |||||||||||||| || || |||| |||||| ||||| | Sbjct 1070313 GCTCAACGTGCGGCCATCTTCGAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGG 1070254 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 || | || |||||||| ||| ||||| || ||| | | | | ||| | || Sbjct 1070253 CGGGATGCCTTCCTTGTCTTGGATCTTTTG-TTTGACGTTGTCGATCGAGTCCGAAGGCT 1070195 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| |||| ||| || || || || |||| ||||| |||||||||||||| || Sbjct 1070194 CCACGTCCAGCGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCATATT 1070140 >seq76 Length=128956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||| |||||| || ||||||||| || || |||||| Sbjct 44875 CCACCGCGGAGGCGAAGAACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTC 44934 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | |||||||||||| || || || || || || |||| ||| Sbjct 44935 AACGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAGATGAGTCGTTGCTGATCCGGAGGA 44994 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| || || ||||| || | | | | |||| || |||||| Sbjct 44995 ATCCCTTCCTTGTCCTGAATCTTCTGCTT-GACATTGTCAATCGAGTCGGACGGCTCCAC 45053 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | ||| || || || || || || ||||| || || ||||||||| Sbjct 45054 GTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 45102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301220397200