Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1679 266 4e-66 >seq1679 Length=19720504 Score = 266 bits (294), Expect = 4e-66 Identities = 507/736 (69%), Gaps = 8/736 (1%) Strand=Plus/Plus Query 145535 ATTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGT 145594 || |||| | ||| ||||| ||||| | |||||| | ||| ||| | || | | || Sbjct 7098148 ATCAGACGGACATGTCCATCTTGATGGTCTTGTGGGGCTTGTACCCCACAAGTTCGAGGT 7098207 Query 145595 CCTCCGCCCTGAAGTCATCTATGTCC-TCCACCCGCCTCAGGATCCTGAGCCTGGGAAAG 145653 |||| | ||||| | || ||||| | || | |||| ||||| |||| ||| Sbjct 7098208 CCTCGTACTTGAAGCCGTCGATGTCGGTGTTGTCGG-TGTTGATCTTGAGCTTGGGGAAG 7098266 Query 145654 GGCCGGGGGCTCCTGGTCA-GCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTG 145712 || || || ||| ||| | |||| ||| |||||||| |||||||| ||| | ||| Sbjct 7098267 GGGCGCGG-CTCGCGGTTAAGCTGTTCCTTGAGGGGCTCGACGTGGTTTTTGTAAATGTG 7098325 Query 145713 CGCGTCCCCCAGGACGTGGATGAAGTCCCCGG-GCTCGAGGCCCGTGAGGTGGGCGACCA 145771 ||| || | |||||||||||| ||||||| || | ||||| ||| | |||| || Sbjct 7098326 GCAGTCGCCGATGACGTGGATGAACTCCCCGGCGCGC-AGGCCGGTGCACTTTGCGAGCA 7098384 Query 145772 TGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCG 145831 | || || || | ||| ||| |||||||||||||| ||||| || ||||| |||| Sbjct 7098385 GATGCGTGAGAAGCGCGTACGAGGCAATGTTGAAGGGCACGCCCAGGCCGATGTCGCCCG 7098444 Query 145832 AGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGT 145891 | |||||||||| ||||| |||||||| || | |||||| ||||| | | || Sbjct 7098445 ACCGCTGGTACATTTGGCACGAGAGCTCGCCCTTGGACACGTAAAACTGCGCGAACATGT 7098504 Query 145892 GGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCC 145951 |||||||||||||||||||| | | | |||||||||||||||| | ||||| | | Sbjct 7098505 GGCAGGGCGGCAGGGCCATGAGGTGGAACGCCGCCGGGTTCCAGGCCGAGAGGATCATGC 7098564 Query 145952 TCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCT 146011 | | | |||||| | ||||| | || | | ||||||||| ||||||| Sbjct 7098565 GGCGGTCCGTCGGGTTCGTTTTGATGGTGTGCACAAGCTGCGCGAGCTGGTCTACGCCCT 7098624 Query 146012 GCCCCCGGTAATCTGTCTTGGA-GTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAAC 146070 | || ||| || ||| || | | | |||| |||| || ||||| | ||||||||| Sbjct 7098625 GGCCGGCGTACTC-GTCGTGCATGGTCTTGTACTCGGCGCCAAAGTGGCGCCACTGGAAG 7098683 Query 146071 CCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAG 146130 ||||| ||||| || || || || ||| | | | || ||| | | | ||| | Sbjct 7098684 CCGTAAACGGGGCCGAGATCGCCCTCCTCGCGATCCGTGAGGCCGATCTTGTCAAGGTAC 7098743 Query 146131 TCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCC 146190 | |||||||||||| ||||||| || | | | || | | ||| |||| | Sbjct 7098744 GCGCGGGACCCGTTGCCGTCCCAAATGTGAATGTCCTTTTCCTGCAGCGACTTGGCGCTG 7098803 Query 146191 GTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTG 146250 ||| ||| ||||||||||||||| || ||| ||| || | ||| ||||| | |||| Sbjct 7098804 GTGTCGCCCGAGATGAACCAGAGCAGTTCCTCGGCGACGCCGCGCCAAAAGACGCGCTTG 7098863 Query 146251 GTGGTCAGCAGGGGGA 146266 || |||||||| |||| Sbjct 7098864 GTCGTCAGCAGCGGGA 7098879 Score = 111 bits (122), Expect = 2e-19 Identities = 261/385 (68%), Gaps = 8/385 (2%) Strand=Plus/Minus Query 145704 GTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTG 145763 ||||| ||| || | ||| || ||||||||||| ||| | | || ||| | | Sbjct 10789326 GTAGATGTGGGCATTCCCGAGCACGTGGATGAACTCCTTCGCCGGGACGCCAACTGCGCG 10789267 Query 145764 GGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCAT 145823 ||| || |||| || |||||| ||||||| | ||||| |||||||| || || | | Sbjct 10789266 GGCTACGATGTGCGTGAGCAGGCAGTAGCTCGTAATGTTAAAGGGCACGCCGAGTGCGAC 10789207 Query 145824 GTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCG-CCACGTAGAACTGGC 145882 ||| | ||||||||| |||||||| ||||| ||| | | | | || ||||||| Sbjct 10789206 GTCGGCGCTGCGCTGGTAGAGCTGGCACGAGAG-TCCTTCCGGGTCAATGTTGAACTGGA 10789148 Query 145883 ACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGA 145942 ||| | |||||| || |||| | |||| | | ||| | ||||| |||| | | Sbjct 10789147 ACAAGCAGTGGCACGGAGGCAAGACCATCTCCGACAGCTGAGCCGGAGACCAGCTGCATA 10789088 Query 145943 GGACGAGCCTCCTGCTCTCGGGGTTCCT-CTTGATCTCCCCTATCAGGTCCCTGAGCTGG 146001 |||| | |||| ||| | || ||| | | | || | | |||| || | | |||| Sbjct 10789087 CGACGTGTCTCCGGCTTCCTGGATTCTTACGCAAGCT-CGCGATCACTTCGTTCATCTGG 10789029 Query 146002 TCCACGCCCTGCCCCCGGTAATCTGTCTTGGA--GTCCACGTACGCGGCCCCGAAGTGCC 146059 || || ||||||||| ||| || || | | |||| ||||| | ||||| ||| | Sbjct 10789028 TCTACCCCCTGCCCCGTGTAGTC-ATCGTTCATCGTCC-CGTACTCCGCCCCAGCGTGGC 10788971 Query 146060 TCCACTGGAACCCGTAGACGGGCCC 146084 ||| ||||| ||||||| ||| || Sbjct 10788970 GCCATTGGAAGCCGTAGAGGGGTCC 10788946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590063176601880