Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1721 340 2e-88 seq1811 174 2e-38 seq1824 158 1e-33 seq1679 84.2 2e-11 >seq1721 Length=237271 Score = 340 bits (376), Expect = 2e-88 Identities = 547/774 (71%), Gaps = 18/774 (2%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGG--CGCATGT 116648 || ||||| ||| |||||| | ||||| || || ||| |||||| ||| ||||| Sbjct 45986 GACAACCCGGACCGCTTCGTGCTCTTCCCGATCCAGCACCAGGACATCTGGGACGCAT-- 46043 Query 116649 ACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGA 116708 |||| ||||||||||| ||||||||||| | ||||||| |||||||| | ||||| || Sbjct 46044 ACAAGAAGGCCGAGGCCTCGTTCTGGACGGCCGAGGAGATGGACCTGGGCCAGGACCAGA 46103 Query 116709 GCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTT 116768 |||| || ||| | | ||||| || || |||||||||| |||||||| | Sbjct 46104 AGGACTTTGACTCAATGACCAAGGGCGAGCAGCACTTTGTCAAGCACGTCCTGGCCTTCT 46163 Query 116769 TCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTTCGCTCAG-GAGGT 116826 |||| || ||||||||||| |||||| | |||||| ||| || || ||||| Sbjct 46164 TCGCGTCCTCGGACGGCATCGTGCTCGAGAACGTCGTCGAGAACTTTTGC--AGCGAGGT 46221 Query 116827 GCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTC 116886 | || ||||||| || |||||||||||||| ||||| ||||| |||||| | ||||| Sbjct 46222 GAGCCTGCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATGGCCATCGAGAACATCCACTC 46281 Query 116887 GGAAATGTATTCGACCCTCATCGACACGTACGTGCGCT-CTTCGGAGGAGAAGCTCCGTT 116945 || |||| ||| ||| |||||||| ||| | ||| | | | ||||||| | | Sbjct 46282 CGAGGTGTACTCGCTCCTTATCGACACCTACATTCGCGACAGCAG-GGAGAAGGCCGGCC 46340 Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 | || |||||| |||| ||| |||| ||||| | ||||| ||||||| |||||| Sbjct 46341 TCTTCAACGCCCTCGACACGCTGCCCTGCGTGCGCCAAAAGGCGCAGTGGGCCATGCGCT 46400 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 || | ||||| | |||| | ||||||||| || | || ||||||||||||| Sbjct 46401 ACATGGACGGCAACATCTGCACCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGG 46460 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || ||||||| |||||| || |||||| || ||||||||||| ||||||||||||| Sbjct 46461 GCATCTTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGC 46520 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || || || ||| ||| ||| | ||| | | |||||||| |||| |||||||| Sbjct 46521 CGGGTCTCACCTTCTCCAATGAGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTG 46580 Query 117186 CCTGTTTGCTGTT---CAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGA 117242 | || |||| || ||||| | | | | || |||| ||| ||||| |||| Sbjct 46581 CTTGCCTGCTCTTCCGCAAGC---TCATCAACCCGCCCAGCGAGGCCCGCGTGCACGAGA 46637 Query 117243 TCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGCGCTGCCGGTGCGT 117301 || ||| ||| |||| |||||| ||| |||| || | || ||||| || || Sbjct 46638 TCATCAAGTCCGCCGTCGAGATCGAG-TGCGACTTCATCTCGGACGCGCTCCCCGTCGAG 46696 Query 117302 CTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGAC 117355 || | || | || | | ||| ||| |||||| |||||||||| ||| Sbjct 46697 CTCATTGGCATGAACTCCAGCCTCATGCAGCAGTACATCAAGTTCGTCGCGGAC 46750 >seq1811 Length=963003 Score = 174 bits (192), Expect = 2e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| ||||| ||||||||| ||||||| || ||| | Sbjct 706205 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGACGTTGAGCCCAGC 706146 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| | || || | ||||| |||||||||||| | || || Sbjct 706145 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 706087 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| ||||| ||||| || |||| ||||| |||| ||||||||| Sbjct 706086 ACAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 706027 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || ||| | ||| || | || || Sbjct 706026 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGCGGTGG 705979 >seq1824 Length=63427 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752 || || ||||| || || |||||||| || ||||||||| |||| ||||| || | ||| Sbjct 54935 CAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 54876 Query 40753 AGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 | | | |||| | ||| || |||| ||||| |||||||||||| | || || || Sbjct 54875 ACGATCGAGAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAACA 54817 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 || || |||| ||| ||||| ||||| || |||| ||||| |||| |||||||||||| Sbjct 54816 GCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACAT 54757 Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||| |||| || || || ||| | ||| | | ||||||||| Sbjct 54756 CCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCGGC 54708 >seq1679 Length=19720504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 |||||||| | ||||||||| | ||||||| || |||||||||| | ||||| || Sbjct 10831400 GAGCGCCTTATCGCCTTCGCGATCTTCGAGGGGGTTTTCTTTTCGGCCTCCTTCGCTTCC 10831459 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAG--CAACGAGCTCA 117152 || || | ||||||| ||||| ||| || ||||| || | |||||| ||| Sbjct 10831460 ATCTTCTTTTTCAAGAAGCGCGGGCTCTTGGAGGGCCT--CTGCACGTCCAACGACTTCA 10831517 Query 117153 TCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 ||||||||||||| | ||||| ||| ||||| || Sbjct 10831518 TCTCCAGGGACGAAGCGCTGCACTGCCGTTTTGCATG 10831554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515207304876720