Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1811 143 2e-29 seq1824 116 3e-21 seq1679 98.7 9e-16 >seq1811 Length=963003 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| ||||| | ||||| ||||| Sbjct 705996 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 706055 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| ||||||||||||| ||||| || || |||||||||||||| Sbjct 706056 GAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 706115 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | |||| |||||| || ||| || |||| ||| | || || Sbjct 706116 GATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACGTCGAGGGTGATGGTCTT 706175 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 |||||| || || || || || |||||||||| Sbjct 706176 GCCGGTGAGCGTCTTGACGAAGATCTGCATGG 706207 >seq1824 Length=63427 Score = 116 bits (128), Expect = 3e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| ||||| | ||||| ||||| Sbjct 54729 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 54788 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| || ||||| ||||| || || |||||||||||||| Sbjct 54789 GAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 54848 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||||| | |||||| |||| ||| | || || Sbjct 54849 AATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTT 54908 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTG 118735 || || || || || || || ||||| Sbjct 54909 ACCCGTGAGGGTCTTGACGAAGATCTG 54935 >seq1679 Length=19720504 Score = 98.7 bits (108), Expect = 9e-16 Identities = 199/293 (68%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 133077 TTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTC 133136 ||||||||||| | |||||| |||| ||||| | | || || || ||| |||| Sbjct 15186453 TTGATCTCCCAGACGGTCTTGTAGAGCGCCTTGAGGTCGTCGGGGATGGCGCCAACGTTC 15186394 Query 133137 TGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGA 133196 ||||| || ||| ||||||| |||| |||||| | |||| || | | || | Sbjct 15186393 TGCACCGAGCCGCGGTCGGCCATGATCTGGTTGCGGATGGCCGGGGTCCAGAGACCGCGC 15186334 Query 133197 TCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGT 133256 ||| || | |||| || | |||||| || |||||||| ||||| ||||| Sbjct 15186333 GAGATGAGGTCCTTGAGCAGGTGTGTGTTGACGACCGTGAACTCGCCAGCGAGGACGCGG 15186274 Query 133257 CT-GAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGC 133315 | ||| || | || ||||| || || || | ||| ||||||||| ||||||| Sbjct 15186273 CGCGAG-TACATGTTGCTGGTGAAGGGCTCAAAGGCCTCGCAGTTGCCGAGAATCTGCGA 15186215 Query 133316 CGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACT 133368 |||| |||||||||||| ||| |||| || ||||| | || |||| || Sbjct 15186214 GGTCGAGGCCGTGGGCATGGGCGCGACCAGCAGCGAGTTACGCACACCGTGCT 15186162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433820634342124