Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1679 237 1e-57 seq1721 154 1e-32 >seq1679 Length=19720504 Score = 237 bits (262), Expect = 1e-57 Identities = 624/942 (66%), Gaps = 8/942 (1%) Strand=Plus/Minus Query 23023 GATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGT 23082 ||| ||||| || ||||| ||||| |||||||| || || |||||| | || ||||| Sbjct 15185731 GATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGATCTCGGT 15185672 Query 23083 ACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGA 23142 || || || |||| || |||| | || ||||||| || || ||||| | Sbjct 15185671 GCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGC 15185612 Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA-CTCGATGATCGCTCGCC 23201 |||||| |||||||| ||||| ||| ||||||| ||| | ||| | |||| || Sbjct 15185611 GTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTC-AGGATCTGGTACC 15185553 Query 23202 ACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTAC 23260 | | ||| ||| | | ||| || | | ||| || | |||||| | ||| Sbjct 15185552 AGAGGTCCTGGGCGCGCATG-GTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTCGTAG 15185494 Query 23261 AACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 | | | | || ||| | ||||| ||| || | ||||| | | |||| || | Sbjct 15185493 AGCTCCTTGAACTCGTCGCCGTAGACA-TCCGAGAGGCCCTTGGCCTCGTTCGGGCAGAA 15185435 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 ||| |||| | || || || || ||||||||| || || | ||| || || Sbjct 15185434 GAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCAGAGGGC 15185375 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 |||||| || ||||||||||| |||||||| |||||| |||||| | || | || Sbjct 15185374 GTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTCAATGAA 15185315 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 |||| ||||| || ||||| ||||||||||| | ||| || | |||| | ||| Sbjct 15185314 GTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCTTGCC 15185255 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 ||||||||| || ||||| ||||| |||| |||| | || | ||||| ||||| | || Sbjct 15185254 GCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAATGCC 15185195 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 ||| ||| |||| ||| || || || || || | |||||| | || Sbjct 15185194 GTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGGCGCGGATGTTGTGGATGTT 15185135 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTC-AGAGTGTCGTAGA 23678 || || ||||| ||| | | || || || |||||| || || || || | | ||| Sbjct 15185134 GACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCA-GGTCTCGAGCGTCTGGAAGA 15185076 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 |||||||||| ||| || || | || | ||| || |||||||||| || Sbjct 15185075 TGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATTTGCGGGCGGG 15185016 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798 | || |||| ||| || ||||| |||||||||| ||| | | |||||| | | Sbjct 15185015 GGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTGCGACATCATGT 15184956 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858 ||| || ||||||||| ||| ||||| | ||| || |||| || ||||||||| | Sbjct 15184955 CGTAGGTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGACGCGCATGA 15184896 Query 23859 TCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918 ||||| || || | |||| | | ||||| || |||| ||| || || || | | Sbjct 15184895 GCATGTGCTGCGGGCGCTCGGCGATCTTGCCGTCAACCTTGAGCAGGTACGAGCGCTCGA 15184836 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 ||| || || || || |||| || | ||||| || |||| Sbjct 15184835 GCGTCTTGAAGCCGAAGAAGTCGTACTCGAAGTCGCGGTCGT 15184794 >seq1721 Length=237271 Score = 154 bits (170), Expect = 1e-32 Identities = 376/565 (67%), Gaps = 10/565 (2%) Strand=Plus/Plus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||||| ||| || ||||| ||||| || || ||||| ||||| | ||| || | ||| Sbjct 46028 GACATCTGGGACGCATACAAGAAGGCCGAGGCCTCGTTCTGGACGGCCGAGGAGATGGAC 46087 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGA--ATCTGAGAGAA--ATTTTAT 57682 ||| |||| | || || | || ||||| || | | ||| | | ||| | Sbjct 46088 CTGGGCCAGGACCAGAAGGACTTTGA----CTCAATGACCAAGGGCGAGCAGCACTTTGT 46143 Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742 || ||||| |||| || ||||| | || || || || || |||||| | ||||| Sbjct 46144 CAAGCACGTCCTGGCCTTCTTCGCGTCCTCGGACGGCATCGTGCTCGAGAACGTCGTCGA 46203 Query 57743 AAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGC 57802 | |||| || ||| || | ||||| | ||||| ||||| || || |||| Sbjct 46204 GAACTTTTGCAGCGAGGTGAGCCTGCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATGGC 46263 Query 57803 CATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAA 57862 ||| || ||| | || || || |||| ||||| || ||||| || ||| | |||| Sbjct 46264 CATCGAGAACATCCACTCCGAGGTGTACTCGCTCCTTATCGACACCTACATTCGCGACAG 46323 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGG 57921 | ||||| | || |||||||| |||| || ||||| ||| |||||| |||| Sbjct 46324 CAGGGAGAAGGCCGGCCTCTTCAACGCCCTCGACACGCTGCCCTGCGTGCGCCAA-AAGG 46382 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 | ||||| | || | || | || || ||| || |||||| | || ||| Sbjct 46383 CGCAGTGGGCCATGCGCTACATGGACGGCAACATCTGCACCTTTGCCGAGCGCCTCGTCG 46442 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 || || |||||||| || || ||||| |||||| |||| || || || ||| | | Sbjct 46443 GTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCA 46502 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||| |||||||| ||||| || || || || ||| ||| |||| |||||||||| Sbjct 46503 AGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATGAGATGATCAGCCGCGACGAGG 46562 Query 58102 GTCTCCATACTGATTTTGCGTGCCT 58126 | | || || || ||||| ||||| Sbjct 46563 GCATGCACACCGACTTTGCTTGCCT 46587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756108368240