Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1679 178 1e-39 >seq1679 Length=19720504 Score = 178 bits (196), Expect = 1e-39 Identities = 409/610 (67%), Gaps = 7/610 (1%) Strand=Plus/Plus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 ||||| || |||||||| ||||||| |||| ||| || | | ||| | || || || Sbjct 7098297 AGGGGCTCGACGTGGTTTTTGTAAATGTGGCAGTCGCCGATGACGTGGATGAACTCCCCG 7098356 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 | | |||||| ||| | |||| ||||| ||| || || ||||| ||| ||||| Sbjct 7098357 GCGCGCAGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGCGCGTACGAGGCAATGTTG 7098416 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 || || || || ||||| |||||| | |||| |||||||| ||||| || ||||| ||| Sbjct 7098417 AAGGGCACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATTTGGCACGAGAGCTCGCCC 7098476 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 | |||||||||||| || | ||| || || || || ||||| | || || Sbjct 7098477 TTGGACACGTAAAACTGCGCGAACATGTGGCAGGGCGGCAGGGCCATGAGGTGGAACGCC 7098536 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGAT-CGTGGGGCCGCCTGTTAATTAGATC 21223 || |||||||| || | | | ||||| || | ||| ||| | | || || | Sbjct 7098537 GCCGGGTTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGG-TTCGTTTTGATGGTGTG 7098595 Query 21224 CACCACGTAACGC-AGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGT 21282 || || | ||| |||||||| || ||||| || |||| | | ||| | ||| Sbjct 7098596 CA-CAAGCTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTACTCGTCGTGCATGGTCTTGT 7098654 Query 21283 ACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGC 21342 |||| || ||||| || | ||||||||| ||||| || || || ||||||||||| || Sbjct 7098655 ACTCGGCGCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGGCCGAGATCGCCCTCCTCGC 7098714 Query 21343 GGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTA 21402 | ||| || ||| | | | | ||||||||||||| |||||||||| | | Sbjct 7098715 GATCCGTGAGGCCGATCTTGTCAAGGTACGCGCGGGACCCGTTGCCGTCCCAAATGTGAA 7098774 Query 21403 CGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCT 21462 | | | ||| ||| | |||| |||| ||| ||||| |||| |||| Sbjct 7098775 TGTCCTTTTCCTGCAGCGACTTGGCGCTGGTGTCGCCCGAGATGAACCAGAGCAGTTCCT 7098834 Query 21463 CCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAA---ACTCGTCCCTGA 21519 | ||||||| | |||||| || | ||||| || | ||| || | ||||| | || Sbjct 7098835 CGGCGACGCCGCGCCAAAAGACGCGCTTGGTCGTCAGCAGCGGGATGGTGTCGTCGCGGA 7098894 Query 21520 GGTTATATCG 21529 || |||| || Sbjct 7098895 GGCTATAGCG 7098904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427766370628560