Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1679 86.0 4e-12 seq1721 84.2 2e-11 >seq1679 Length=19720504 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 33523 GCCGATGGGTGCAAATGCGTCAAGATCAAGCTGCGCAAGATACGCATACCAGAGATGGGC 33582 ||||| || | ||| | ||||||| ||||| |||| | | || |||| ||| Sbjct 2530472 GCCGACGGCTTCAAGTTCGTCAAGGTCAAGTACCGCACCGTGATGGTGCCGCAGATCGGC 2530531 Query 33583 GACAAGTTTGCATCG-TTCACGGCCCAGAAGGGCACGTGCGGCATGATGTA---CGACCA 33638 |||||||| || ||| ||||| || |||||||| || ||||||| || || ||| Sbjct 2530532 GACAAGTTCGCCTCGCGCCACGG-ACAAAAGGGCACCTGTGGCATGACCTATGGCGCCCA 2530590 Query 33639 GTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCGCATGC 33698 || |||||||||||| |||||||| ||||||| | || ||||||||||||| Sbjct 2530591 ---CGATATGCCGTTCACGCAGGACGGCGTCAACCCGGACATTATCGTCAACCCGCATGC 2530647 Query 33699 GTTCCCCTCGCGCATGAC 33716 | ||| |||||||| Sbjct 2530648 TATTCCCAGTCGCATGAC 2530665 >seq1721 Length=237271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 22753 TTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAG 22812 |||||||| || || ||| || | || || || || ||| ||||| |||||||| ||| Sbjct 46445 TTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAG 46504 Query 22813 AAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGT 22872 || || |||||||| || | | || ||||| ||| |||| ||||| ||||| || Sbjct 46505 AAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATGAGATGATCAGCCGCGACGAGGGC 46564 Query 22873 CTACACTGTGACTTTGCTTGTATGCTGTT 22901 | ||| ||||||||||| |||| || Sbjct 46565 ATGCACACCGACTTTGCTTGCCTGCTCTT 46593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356225581070341