Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1721 178 2e-39 seq1679 98.7 1e-15 >seq1721 Length=237271 Score = 178 bits (196), Expect = 2e-39 Identities = 588/885 (66%), Gaps = 37/885 (4%) Strand=Plus/Plus Query 124999 TTCCC-ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| ||| | | || ||||| ||||| ||||| ||||| ||||||| || ||| Sbjct 46010 TTCCCGATCCAGCACCAGGACATCTGGGACGCATACAAGAAGGCCGAGGCCTCGTTCTGG 46069 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 |||| ||| ||| | || ||| | |||||| | | || | || ||| | ||| | Sbjct 46070 ACGGCCGAGGAGATGGACCTGGGCCAGGACCAGAAGGACTTTGA--CTCAAT-GACCAAG 46126 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 |||| | ||| | |||| | |||||||||| || ||| || || ||||| Sbjct 46127 GGCGAGCAGCACTTTGTCAAGCACGTCCTGGCCTTCTTCGCGTCCTCGGACGGCATCGTG 46186 Query 125178 AACGACAATCT-GTTGACACGATTCTCTCAA-GAGTTGACCATTCCAGAGGTGTCG-TGC 125234 ||| || | || || | | | | || ||| ||| | | || |||| ||| ||| Sbjct 46187 CTCGAGAACGTCGTCGAGA--ACTTTTGCAGCGAGGTGAGCCTGCCCGAGGC-TCGCTGC 46243 Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 || ||||| ||||| || || |||||| | ||||| || ||||||| || || Sbjct 46244 TTCTACGGCTTCCAGATGGCCATCGAGAACATCCACTCCGAGGTGTACTCGCTCCTTATC 46303 Query 125295 GACATGTACATTCGCGATCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACGGT 125353 |||| ||||||||||| | ||| | || | || |||| ||||| |||||||| | Sbjct 46304 GACACCTACATTCGCGA-CAGCAGGGAGAAGGCCGGCCTCTTCAACGCCCTCGACACGCT 46362 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 ||| | | || ||||||| || |||| || || | || || | | ||| | | Sbjct 46363 GCCCTGCGTGCGCCAAAAGGCGCAGTGGGCCATGCGCTACATGGACGGCAACATCTGCAC 46422 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTT 125472 | ||||| | || || | || || ||||| |||||||||||||| ||||| | || Sbjct 46423 CTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 46482 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 |||| |||||||| ||||||||||||||||| |||||||| || || || | || | Sbjct 46483 TTGC-GCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATG 46541 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAA-C 125591 || | || || ||||||||| | ||| |||||||| || || || ||||| | Sbjct 46542 AGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTGCTCTTCCGCAAGC 46601 Query 125592 T-ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGC 125650 | ||| | || || | || || ||| | || ||||||| || || || Sbjct 46602 TCATCAACCCGCCCAGCG-AG-GCCCGCGTGCACGAGATCATCAA----GT--CC---GC 46650 Query 125651 CGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGGCATGA 125709 ||| ||| || || || | | || | || || ||| ||| | |||||||||| Sbjct 46651 CGTCGAGATCGAGTGCGACTTCATCTCGGACGCGCTCCCCGTCGAGC-TCATTGGCATGA 46709 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 ||| || || ||| ||||||| |||| || || || || || | | || Sbjct 46710 ACTCCAGCCTCATGCAGCAGTACATCAAGTTCGTCGCGGACCGCCTCGT---CAAGGCTC 46766 Query 125770 TTGGCCGCAAG---ATTTACAACGCCAAGAATCCCTTTGATTTCAT-GACCAGCATATCA 125825 | ||| ||||| || ||| || |||| |||||||| | || |||| | || || Sbjct 46767 TCGGCTGCAAGGCCATCTACGGCGTGCAGAACCCCTTTGACTGGATGGACCTG-ATCTCC 46825 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | |||| ||||||||||||||||| ||| ||| |||||||| Sbjct 46826 ATGCAGGGCAAGACCAACTTTTTCGAAAAGCGCGTCGGCGAGTAC 46870 >seq1679 Length=19720504 Score = 98.7 bits (108), Expect = 1e-15 Identities = 310/475 (65%), Gaps = 4/475 (1%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965 ||| | ||| | || ||||||||||| ||||| ||||| || ||| | ||||| ||| Sbjct 15185276 GCCATGTACCTCGAGCCTTGGCACGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAAC 15185335 Query 96966 TCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTG 97025 ||| || |||| || ||| | ||| | || || || |||||||| || || | Sbjct 15185336 CACGGCAAGGAGGAGGTCCGCGCCCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTT 15185395 Query 97026 TTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCC 97085 || ||| |||| ||| | | | || ||||| ||| | ||||| || | | Sbjct 15185396 TTTATGCAGCGTGTCGAGGCCAACAGCACCTGGACCCTCTTCTGCCCGAACGAGGCCAAG 15185455 Query 97086 GGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAG 97145 || || || ||| || ||||| ||||| ||| ||| | ||||||| | ||| Sbjct 15185456 GGCCTCTCGGATGTCTACGGCGACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAG 15185515 Query 97146 GGCCG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGA-CGGCTC 97203 ||||| || |||| | || || | || || ||| | ||| ||| | || | Sbjct 15185516 GGCCGCGGCCGCAAGACCATGCG-CGCCCAGGACCTCTGGTACCAGATCCTGAGCTGC-C 15185573 Query 97204 AGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACC 97263 || | ||||| || |||| ||| |||| |||||| || || ||||| |||| Sbjct 15185574 AGATCGAGACCGGCGTGCCGTTCATGCTCTTCAAGGACGCCTGCAACCGCAAGTCGAACC 15185633 Query 97264 AACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCT 97323 | || | |||| ||||||| ||| || |||||||| || || | |||||| | Sbjct 15185634 AGAAGAACCTCGGCATCATCAAGTCCTCGAACCTGTGCACCGAGATCATCGAGTACTCGG 15185693 Query 97324 CTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 | || |||||| || || ||| || || || |||| |||| |||||| || Sbjct 15185694 CCCCTGACGAGGTCGCCGTCTGCAACCTCGCCTCCATCAACCTGCGCAAGTTCGT 15185748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741042090795720