Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015-
12-09] 1,847 sequences; 43,429,441 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1811 100 7e-16
seq1824 84.2 5e-11
>seq1811
Length=963003
Score = 100 bits (110), Expect = 7e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || || || ||||| || || ||||| || || | |||||
Sbjct 705993 AAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTC 706052
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || || || || || || || || | |||||||||||| || || || || || ||
Sbjct 706053 CTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTC 706112
Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525
||| ||||| ||| || || || || | ||| ||||| || || || || || || || |
Sbjct 706113 CTGGATCTTCTGC-TTCACGTTCTCGATGGTGTCGCTGGGCTCAACGTCGAGGGTGATGG 706171
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| || || || || || || || ||||||||
Sbjct 706172 TCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 706205
>seq1824
Length=63427
Score = 84.2 bits (92), Expect = 5e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || | ||||| || || || || ||
Sbjct 54742 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 54801
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | |||||||||||| || || || || || ||||||||||| | ||
Sbjct 54802 GCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTC 54861
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || || || || || || || || |||||||| || || ||
Sbjct 54862 ACGTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTC 54921
Query 104543 TTTACAAATATCTG 104556
|| || || |||||
Sbjct 54922 TTGACGAAGATCTG 54935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151371152516676
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |