Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq1679 93.3 4e-14 >seq1679 Length=19720504 Score = 93.3 bits (102), Expect = 4e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 94351 GAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGGTACGGGTCCTGGCCGATGATGACCAC 94410 ||| || |||||||| ||||||||||||||||||||||||||||| |||| |||||| || Sbjct 11776582 GAACGCGAGCCCGTGCGCCTGGCCCGGCCCGTGGTACGGGTCCTGACCGAGGATGACTAC 11776641 Query 94411 CTTGAC 94416 |||||| Sbjct 11776642 CTTGAC 11776647 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 27259 TACCAGGGCGCCAAGGTGCTCGAGCCCGACTCGGGCTTCCACGTGGACCCGGTGCTCGTG 27318 ||||||||||| | |||| || | ||| | || ||| || ||||||||||| |||| Sbjct 10819596 TACCAGGGCGCGACGGTGATCTCGTGCGAGGCCGGGTTCTACATGGACCCGGTGGTCGTC 10819537 Query 27319 CTGGACTTTGCCAGCCTGTACCCGAGCATCATCCAGGCGCACAACCTGTGCTTCACGACG 27378 |||||||| ||| ||||||||| |||||| || |||||||| || ||| ||| Sbjct 10819536 CTGGACTTCGCCTCCCTGTACCCATCTCTCATCCGCTCGTACAACCTGGACTACACCACG 10819477 Query 27379 CTCGCGCTCG 27388 | || |||| Sbjct 10819476 ATTGCCCTCG 10819467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458936604056520