Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1679 168 6e-37 seq1811 159 3e-34 seq1824 118 1e-21 seq1721 105 6e-18 >seq1679 Length=19720504 Score = 168 bits (186), Expect = 6e-37 Identities = 959/1513 (63%), Gaps = 41/1513 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||| |||||||| || | || || ||| | |||| ||| |||||||| Sbjct 15186306 TTGACGACCGTGAACTCGCCAGCGAGGACGCGGCGCGAGTACATGTTGCTGGTGAAGGGC 15186247 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 ||||| | |||| ||||| || || || | ||||| || ||||||||| ||| ||| Sbjct 15186246 TCAAAGGCCTCGCAGTTGCCGAGAATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCGACC 15186187 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || || |||| ||||||| | ||| | | ||||| |||| ||||| Sbjct 15186186 AGCAGCGAGTTACGCACACCGTGCTGCATGACGCGCTGACGCAGCGTCTCCCAGTCCCAG 15186127 Query 145238 ---AGCGAAG---TCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCG 145291 ||| | | ||| || ||| ||| | |||| |||| || |||||||||| | Sbjct 15186126 CCGAGCTCCGGGTTGGGCTTCTCGTTCCAGAGGTCGAACTGGAACTTGCCCTCGCTCATG 15186067 Query 145292 GGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG-GCGAGCTCGCAACTCGCC-T 145349 || | || |||| | ||| || | ||| | || || |||||||| || | Sbjct 15186066 GG-CGACCCGGAAAAGGTCTGGTACGGGCCCTCCTCCTGCGCCAGCTCGCACGAGGCGGT 15186008 Query 145350 CCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGC 145409 ||| ||||| || || || |||||| || | | ||||||| || || || Sbjct 15186007 GCAG-GCGCCAAAGTAGATGGTCTCGAAGATGTCGCGGTTGAGCTTGCGGGCCTCCGGGC 15185949 Query 145410 TCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGA 145469 |||| | || | ||||||| | | |||| |||||| ||||| | || | ||||| Sbjct 15185948 TCTCAAAGGGGAAGCGCAGCTCCATGAGCGCATTGGCGAGGCCCTGAACGCCAATGCCGA 15185889 Query 145470 TGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGA 145529 |||| || || | ||||||| | ||| ||||| || || || | ||||| Sbjct 15185888 TGGGGCGGTGGCGCGTGTTGCTGCGCTCGGCCTCCTCGACGGGGTAGAAGTTGCCGTCGA 15185829 Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAA 145589 | | || | ||| || ||||| || | | | | ||||| Sbjct 15185828 TGACGCGGTTGAGGTTCTTGGTGACGACCTTGGTGACATCGTAGAGGGCCTGGAAGTCGT 15185769 Query 145590 ACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTG 145649 | |||| |||| | || | | | | ||| || || | || || || | Sbjct 15185768 AGGTGCCCTCCTCAATGTTGACGAACTTGCGCAGGTTGATGGAGGCGAGGTTGCAGACGG 15185709 Query 145650 CCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGG 145709 | ||| || | | | ||| | | |||||||| ||||| || | |||||| Sbjct 15185708 CGACCTCGTCAGGGGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGAGGACTTGATGA 15185649 Query 145710 TTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTC 145769 | || || || | ||| || || | |||||| ||||||||| |||||||| |||| Sbjct 15185648 TGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGAAGAGCATGAACGGCA 15185589 Query 145770 CGCCAGTCTCCACCTG-CGTCTCCACGATAAAACGGTGCAAG---TCCTGCGCACGCACC 145825 |||| ||||| | ||| | ||| | ||| ||| | || ||||| || |||| Sbjct 15185588 CGCCGGTCTCGATCTGGCAGCTC-AGGATCT---GGTACCAGAGGTCCTGGGCGCGCATG 15185533 Query 145826 TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCG 145885 || || ||||||||| | ||||| | ||||||||||| ||| || ||| Sbjct 15185532 GTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTCGTAGAGCTCCTTGAACTCGTCGCCG 15185473 Query 145886 TAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCG 145945 ||| ||| || ||||| || ||| || || | || | ||| || |||||| Sbjct 15185472 TAGACATCCGAGAGGCCCTTGGCCTCGTTCGGGCAGAAGAGGGTCCAGGTGCTGTTGGCC 15185413 Query 145946 TTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTG 146005 | ||| |||| |||||| | || || ||||| || ||||| | | |||||| || | Sbjct 15185412 TCGACACGCTGCATAAAAAGGTCGGGGACCCAGAGGGCGTAGAAGAGGTCGCGGGCGCGG 15185353 Query 146006 CAATCCTCAGCACCCATGTT-TCGC----TTCAAATTAAGCACACTATAGATGTCCGCGT 146060 ||||| || ||| | || || ||| ||| | | || ||| |||| Sbjct 15185352 ACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTC-AATGAAGTCC----TCGACGTCGGCGT 15185298 Query 146061 GCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTCCACGT 146117 |||| || || | || | ||||| || || || || || ||| ||||||||||||| Sbjct 15185297 GCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGT 15185238 Query 146118 GACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCG 146177 || | ||| ||| |||||||| | ||| ||| | | |||| | | |||||| | Sbjct 15185237 AGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAATGCCGTTCGACTGGCCGTTGG 15185178 Query 146178 TAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGC 146237 | | | | |||| || ||| | | || | || ||||||| |||||| Sbjct 15185177 TGCCGGCGACGTAGCTGCCCGAGGCGCGGATGTTGTGGATGTTGACGCCGATGCCGCCGG 15185118 Query 146238 CGTACTTGGATATAGCG-GCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296 |||||||||| || ||| |||||| ||||||||| | ||||||| || || ||| Sbjct 15185117 CGTACTTGGAGAT-GCGCGCGCAGGTCTCGAGCGTCTGGAAGATGCCCTCGATCGAGTCG 15185059 Query 146297 --CTTCGAATGC-CGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAG 146353 |||| ||| |||| | ||| || |||| |||| || || || || | Sbjct 15185058 TCCTTCATGTGCACGAGGAAGCAGCTCG---ACATTTGCGGGCGGGGGGTGCCGGCGTTG 15185002 Query 146354 AACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATA 146413 || | ||||| | |||||||| || | || | |||||| || || ||||| Sbjct 15185001 AAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTGCGACATCATGTCGTAGGTCTCGATG 15184942 Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473 ||| | ||||||| || ||||| | | |||||||||||||||||| || || Sbjct 15184941 GCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGACGCGCATGAGCATGTGCTGCGGG 15184882 Query 146474 CGCTCCGCCA-CTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCC 146532 ||||| || | |||| ||||| ||| | || || | ||| || || ||| | || Sbjct 15184881 CGCTCGGCGATCTTG-CCGTCAACCTTGAGCAGGTACGAGCGCTCGAGCGTCTTGAAGCC 15184823 Query 146533 GAAAAATTTGTAC 146545 ||| || | |||| Sbjct 15184822 GAAGAAGTCGTAC 15184810 >seq1811 Length=963003 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || ||||| | || | ||| |||||||| || |||||||| ||||| Sbjct 705979 CCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 706038 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||| || || || ||| Sbjct 706039 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCAGGGGGG 706098 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| |||||||| | | ||| | || ||| ||| ||| | | Sbjct 706099 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACG 706158 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| ||||||||| Sbjct 706159 TCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATG 706206 >seq1824 Length=63427 Score = 118 bits (130), Expect = 1e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | || ||||| | || | ||| |||||||| || |||||||| ||||| Sbjct 54711 GCCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 54770 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| ||||||||||| ||| |||| | ||||| || || || || Sbjct 54771 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGG 54830 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||| | | ||| | || || | || ||||| Sbjct 54831 GATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGAC 54890 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTG 131231 |||| ||| | ||| ||||| || || || || ||||| ||||| Sbjct 54891 ATCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTG 54935 >seq1721 Length=237271 Score = 105 bits (116), Expect = 6e-18 Identities = 343/519 (66%), Gaps = 19/519 (4%) Strand=Plus/Plus Query 46085 TGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGA 46144 |||| ||||||||| | || | | ||||| ||| | || || ||| || | | Sbjct 46362 TGCCCTGCGTGCGCCAAAAGGCGCAGTGGGCCATGCGCTACATGGACGGCAACATCTGCA 46421 Query 46145 CTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTT 46204 | || |||||||| | || | |||||| || |||||| |||| || || ||| | Sbjct 46422 CCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCT 46481 Query 46205 TTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACG 46264 || ||||||||| | |||| | ||| ||||||| || || || || ||| | Sbjct 46482 TTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATG 46541 Query 46265 AGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACA--C 46322 || |||| |||||||||||| |||| || |||||||| || || || || | Sbjct 46542 AGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTGCTCTTCCGCAAGC 46601 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGC-TGAGCATGTTCAAGGAGGCGGTGG 46381 || | || | ||| | ||||| ||||| ||| || ||||| || || | Sbjct 46602 TCATCAACCCGCCCAGCGAG-GCCCG----CGTGCACGAG-ATCATCAAGTCCGCCGTCG 46655 Query 46382 CCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCAC 46441 || ||| || || | ||| ||| || |||| | || | ||||||||| | | Sbjct 46656 AGATCGAGTGCGACTTCATCTCGGACGCGCTCCCCGTCGAGCTCATTGGCATGAACTC-C 46714 Query 46442 AGTC-AATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCACCA 46499 || | ||| | |||||| |||| || |||||||| || || | ||| || | Sbjct 46715 AGCCTCATGCAGCAGTACATCAAGTTCGTCGCGGACCGCCTCGTCAAG--GCTCTCGGCT 46772 Query 46500 GCCGAAG--CATTTTC-ACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGA 46556 || ||| ||| | | || || || || ||||| | ||| || |||||| || | Sbjct 46773 GC--AAGGCCATCTACGGCGTGCAGAACCCCTTTGACTGGATGGACCTGATCTCCATGCA 46830 Query 46557 GGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 |||||| || || |||||||||||||||||||||||||| Sbjct 46831 GGGCAAGACCAACTTTTTCGAAAAGCGCGTCGGCGAGTA 46869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472001902404480