Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq1537 95.1 1e-14 seq1679 86.0 8e-12 >seq1537 Length=224974 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 126180 GGTGTAAATGTAGCGGGGAGCT-GCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACT 126238 |||| | ||||| || || ||| || | |||||||| |||| || |||||||| |||| Sbjct 202739 GGTGAAGATGTAACGCGG-GCTCGCAGCGTCCTTGCCACCCTGCAGTCGCGTGCCGAACT 202797 Query 126239 GACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGA 126298 | || || | || | | | | ||||||| ||||||||||||||||| | ||| Sbjct 202798 GGCCCGAGGGGTACAGGAGCGGGAGATTGTTGCTGCCCACAAAGTCCTGCGCCATGTTGG 202857 Query 126299 CAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358 ||||| | ||| |||||| ||||| | |||| ||||||||||| | || || Sbjct 202858 TGATGGTGGAGGTCAGAGACTGCTCACCGTGGTGGTAGGCGGTCTGCTCGCCGACAACGC 202917 Query 126359 CGCTCAGCTGCGCAACCTTGA 126379 || ||||| || ||||||| Sbjct 202918 CGGCGAGCTGGGCCACCTTGA 202938 >seq1679 Length=19720504 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15059 GGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCCCCAG 15118 || ||||||||| ||| | | ||||||||| ||| | |||| | || ||| Sbjct 1729430 GGTGACAAGTTTGCCTCGCGCCACGGGCAAAAGGGTGTCTGCAGTGTGATCTGGCCTCAG 1729489 Query 15119 GAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGC 15178 || || ||||||||||| | ||| |||||||| || |||| ||||||||||| || Sbjct 1729490 GAGGATATGCCCTTTACGGAGTCGGGCATGACCCCGGACACCATCATCAACCCGCACGCT 1729549 Query 15179 ATCCCGTCCCGCATGACCAT 15198 ||||||| ||||||||||| Sbjct 1729550 TTCCCGTCGCGCATGACCAT 1729569 Score = 86.0 bits (94), Expect = 8e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 15016 CATCGTAAAGGTTGTCATTGGCCAGATGCGCACGCCCGAGATTGGCGACAAGTTTTGCTC 15075 |||| | ||||| || | || || |||||| | |||| | ||||||||||| | ||| Sbjct 7205259 CATCATCAAGGTCGTTACGCGCGAGGTGCGCATGATCGAGCTGGGCGACAAGTTCTCCTC 7205318 Query 15076 TGGTATGGCGCAAAAGGGC-ACGTGCGGCATGATTTTCCCCCAGGAAGACATGCCCTTTA 15134 | | |||||||||| ||| |||| | || | || |||| ||||||||||||| Sbjct 7205319 GCGCCACGGGCAAAAGGGCGTCGT-CGGCCTCATCGTGCCGCAGGTGGACATGCCCTTTA 7205377 Query 15135 CCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGCATCCCGTCCCGCATGA 15194 | | ||||| |||||| || ||||| |||||| || | ||||| |||||||| Sbjct 7205378 CGGACCAGGGCATCGTGCCCGATATCATCATGAACCCCCACGGATTCCCGAGCCGCATGA 7205437 Query 15195 C 15195 | Sbjct 7205438 C 7205438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611377884487200