Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq418 129 1e-24 seq1817 123 5e-23 seq1721 89.7 1e-12 seq323 84.2 4e-11 >seq418 Length=4586 Score = 129 bits (142), Expect = 1e-24 Identities = 432/662 (65%), Gaps = 48/662 (7%) Strand=Plus/Plus Query 279723 ATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAG 279782 |||||||| |||||||| ||||||| || | |||||| |||| || | |||||| Sbjct 3074 ATGAAGCTCGCCCTCACCTGCGCCATGCTCCGCAAGGCCGATATCCTTCTCATGGATGAG 3133 Query 279783 CCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAA----CCAG 279838 || ||||||||| ||||| |||||| ||| | || |||||| | | || Sbjct 3134 CCCACCAACCACTTGGACGTGCTCAACGTCCAGTGGGTCGTCGACTACCTCATGGGCGAG 3193 Query 279839 TC-TG-AAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTG 279896 | || ||||| || | || ||||| ||||| |||||| | ||||| || ||| Sbjct 3194 CCGTGCAAGAACGTGACCTCGCTCATCGTCTCGCACGACACCAAGTTCCTCGACAACGTC 3253 Query 279897 TGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCACATCGGCAACCTG 279956 | | ||| || |||| || | || |||||| ||| ||| ||||||||| Sbjct 3254 GCCACGCACATTATCCACTTCGAC---ACCCTCAAGCTCAACAACTACAAGGGCAACCTG 3310 Query 279957 TCTGCTTTCGTGGCAAAGCGC---CCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCC 280013 || ||||| | ||||| || ||||| |||||||| || || | || Sbjct 3311 TCCAAGTTCGTCG---AGCGCTTCCCGGAGGCCAAGGCCTACTACGATCTCA------CC 3361 Query 280014 ACCGCCAAGTGGG------AATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAAAG 280067 || ||||| || | ||||| |||| || || || ||| ||| || ||| Sbjct 3362 GCCTCCAAGCTGGCCTTCAAGTTCCCCAAGCCGGGCCCGCTCGACGGCGTCAAGTCCAAG 3421 Query 280068 GATCGCGCAATCATGAAGCTCCGTGGC----GTCTCCTTTGCTTATCCCAATGGCCCCAA 280123 | ||| | |||||| ||| || | ||||| || | || || || || Sbjct 3422 GGCCGCCCCATCATG----TCCATGACCGATGTCTCGTTCACCTACCCGGGCTGCGAGAA 3477 Query 280124 ----CATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTG---GTGTCA 280176 || || |||| ||||| | || || ||| ||| || || | ||||| Sbjct 3478 GCCCCAGCTCGAGCACA-TCAACGTCCGCGTCTCGATGGCCTCGCGCATCGCCTGTGTC- 3535 Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 || |||| ||||| || ||||| ||| | ||||| |||| || |||||| | || Sbjct 3536 --GGCGCCAACGGTGCCGGCAAGTCCACCATGATCAAGCTCCTCACCGGCGAGTTCAAGC 3593 Query 280237 CCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCG-GATGGCTTACGTCGCTCAGCAC 280295 || | |||| | | | ||||| || ||| ||| | | || |||||||| |||||| Sbjct 3594 CCTCGAAGGGTACTATCTTCAAGCACCCGAAC-TGCAAGTTCGCCTACGTCGCCCAGCAC 3652 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 || ||||||||||||||| | ||||| |||| ||| | ||| | ||||| ||||||||| Sbjct 3653 GCCTTCCACCACATCGAGCAGCACCTCGACAAGACCGCCAACGAGTACATCCAGTGGCGC 3712 Query 280356 TA 280357 || Sbjct 3713 TA 3714 >seq1817 Length=459392 Score = 123 bits (136), Expect = 5e-23 Identities = 258/380 (68%), Gaps = 16/380 (4%) Strand=Plus/Plus Query 218572 ATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTC 218631 || |||||| |||| || ||||||||||| |||||||| ||| | ||||||||| ||| Sbjct 224574 ATCCCCAGCATGGTCGACGGCCTCAAGCCCTCGCAGCGCAAGGTGCTCTTTGCCTGCTTC 224633 Query 218632 AAGCGGAACCTGGTTCAA----GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGA 218687 ||||| || | |||| || || |||||||| ||| | ||| || || || || Sbjct 224634 AAGCGCAA----GCTCAAGTCGGACATCAAGGTCGCGCAGCTCGTTGGCTACGTCTCGGA 224689 Query 218688 AATTTCTGGCTACCATCACGGTGAGCAGAGTCT-GCAG-GGT--GCCATTGTAGGCATGG 218743 || | ||||| ||||||||| |||| || | || | || || |||||| Sbjct 224690 GCACTCGGCGTACCACCACGGTGAG----GTCTCGCTGTCGTCGACGATCGTCAGCATGG 224745 Query 218744 CACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTT 218803 | ||| || ||||||| |||||||| ||| |||| |||||| ||| ||||| |||| Sbjct 224746 CGCAGACCTTTGTGGGCTCGAACAACATCAACCTGCTCTTCCCCAGCGGCCAGTTCGGTT 224805 Query 218804 CTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGC 218863 | || | | || || ||||| || || || | || || ||||| | ||| Sbjct 224806 CGCGCATTCTCGGCGGCAAGGACGCGGCCTCGGCGCGTTACATTTTTACGCGCCTCGCGC 224865 Query 218864 CCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACG 218923 | | |||||| | | ||| | || ||| || | |||||| | || || ||||||| Sbjct 224866 CTCTCACGCGCAGGCTTTTCCACGAGCACGACGACGCGCTCCTCGACTACCTCGAGGACG 224925 Query 218924 ATGGTTCTTCGATTGAGCCC 218943 | || || || |||||| Sbjct 224926 ACGGCCAGTCCATCGAGCCC 224945 >seq1721 Length=237271 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| ||||||||||| ||||| | ||| ||||| | || || ||||| | || Sbjct 46570 GTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGCATGAGGCC 46511 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 || ||| ||||||||||||| ||||||||||| || ||||| | | |||||||| Sbjct 46510 GCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATGCCCTCGACGGC 46451 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAA 251990 | | | | || |||||||| ||||| Sbjct 46450 CGCAAAACCGACGAGGCGCTCGGCAAA 46424 >seq323 Length=717221 Score = 84.2 bits (92), Expect = 4e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 || || |||||||||||||| |||||||||| | ||||||||||| | |||||| ||||| Sbjct 557798 AGGTATCCCGGTTAGCTCAG-CGGTAGAGCGTTTGACTCTTAATCAAATGGTCGAGGGTT 557740 Query 142559 CGAGCCCCACATCGGG 142574 ||| |||| ||| ||| Sbjct 557739 CGATCCCCTCATTGGG 557724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027812476563327