Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1679 194 3e-44 seq1824 165 2e-35 seq1811 163 5e-35 seq1721 150 3e-31 seq1817 120 6e-22 seq418 113 8e-20 seq215 86.0 1e-11 >seq1679 Length=19720504 Score = 194 bits (214), Expect = 3e-44 Identities = 1068/1683 (63%), Gaps = 63/1683 (4%) Strand=Plus/Minus Query 30983 CTCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCCAATGAC-ACGT--TG 31039 |||||| |||||||||||| |||||||| || | ||||| | | | |||| || Sbjct 15186448 CTCCCAGACGGTCTTGTAGAGCGCCTTGAGGTCGTCGGGGATGGC---GCCAACGTTCTG 15186392 Query 31040 GATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGC 31099 | || || | || ||| || |||||||| |||||| || ||| || || | Sbjct 15186391 CACCGAGCCGCGGTCGGCCATGATCTGGTTGCGGATGGCCGGGGTCCAGAGACCGCGCGA 15186332 Query 31100 GATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCG 31159 ||||||||| | |||| ||||||| || | |||||| ||||| ||| ||||| Sbjct 15186331 GATGAGGTCCTTGAGCAGGTGTGTGTTGACGACCGTGAACTCGCCAGCGAGGACGCGGCG 15186272 Query 31160 GCTGTACAGATTAGAAGTGATCGGCTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGT 31219 ||||| || |||| ||||| | ||||| | ||| || |||| ||| Sbjct 15186271 CGAGTACATGTTGCTGGTGAAGGGCTCAAAGGCCTCGCAGTTGCCGAGAATCTGCGAGGT 15186212 Query 31220 GGATGCGGTGGGCATCAGCGCGGTGGTCAGCGAATTCCTGACACC---CTTCTTGACGCG 31276 || || |||||||| ||||| |||||| || | ||||| || | ||||||| Sbjct 15186211 CGAGGCCGTGGGCATGGGCGCGACCAGCAGCGAGTTACGCACACCGTGCTGCATGACGCG 15186152 Query 31277 CTCTTCGAGGGTCTTCCAGT-CAAGGCGAGTTACCGGCTCGG-TTC----CCCAGAGGTG 31330 || || |||| ||||| | || |||| | | || | || ||| |||||||| Sbjct 15186151 CTGACGCAGCGTCTCCCAGTCCCAGCCGAGCTCCGGGTTGGGCTTCTCGTTCCAGAGGTC 15186092 Query 31331 ATACTGCATCACACCACGAGACGCGGGAGACCCCTCAAAGGTAGGATGGGGACCGTGCTC 31390 |||| | | || | ||| ||||| |||||| | | || || | ||| Sbjct 15186091 GAACTGGAACTTGCCCTCGCTCATGGGCGACCCGGAAAAGGTCTGGTACGGGCCCTCCTC 15186032 Query 31391 TTCCGCGAGTTCGCAAGAGGC-CTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCC 31449 | ||| || ||||| ||||| | || || ||||||| || |||| ||||| || | Sbjct 15186031 CTGCGCCAGCTCGCACGAGGCGGTGCA-GGCGCCAAAGTAGATGGTCTCGAAGATGTCGC 15185973 Query 31450 GGTTGAGGTTCTTGGCCGCGTCAGAG---TCAAAAGGCATGCGCAGCTTGAAGAACACGT 31506 ||||||| |||| || || | | ||||| || | |||||||| | || | | | Sbjct 15185972 GGTTGAG---CTTGCGGGCCTCCGGGCTCTCAAAGGGGAAGCGCAGCTCCATGAGCGCAT 15185916 Query 31507 CCTGAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCT 31566 || ||||| || || | || || ||||| ||||| |||| || || |||| Sbjct 15185915 TGGCGAGGCCCTGAACGCCAATGCCGATGGGGCGGTGGCGCGTGTTGCTGCGCTCGGCCT 15185856 Query 31567 CGGGAATTGCGTAGGACATGACGTCAATGCTCTTGTCGAGGTTCTTGGCCAGAATCTTCA 31626 | | | |||| | || |||| ||| || ||||||||||| | | ||| Sbjct 15185855 CCTCGACGGGGTAGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTTGG 15185796 Query 31627 CGTGCTTGCGAAGGTCCTCAAAGTCGTAGGCACCGT------TCTTGACGTAGTTCTGGA 31680 | | | ||| ||| |||||||||| || | | |||||| | || | | Sbjct 15185795 TGACATCGTAGAGGGCCTGGAAGTCGTAGGTGCCCTCCTCAATGTTGACGAACTTGCGCA 15185736 Query 31681 GGACGATGCTTCCAATGACACACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCT 31740 || |||| | | | || || || ||||| | | | ||| |||| |||| Sbjct 15185735 GGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGATCT 15185676 Query 31741 CGGCACAAAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-C 31799 ||| || || || | | ||||| ||||| || ||| | ||| ||| | Sbjct 15185675 CGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGC 15185616 Query 31800 ACGCTGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCA 31859 | || ||||||| ||||| | | |||| ||| ||||||||||| | | | ||| Sbjct 15185615 AGGC-GTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTGG 15185557 Query 31860 TTCCAGACATC----GCGCGCTTTGACGACTTTCTTCGCACGCCCCTCGGACTCGTAGCG 31915 | ||||| || |||||| | | ||| | | | || ||||| ||||||||| Sbjct 15185556 TACCAGAGGTCCTGGGCGCGCAT---GGTCTTGCGGC-CGCGGCCCTCCTTCTCGTAGCG 15185501 Query 31916 AAGATACAGGTCCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGG 31975 || || |||| | |||| | ||| || |||| | || || ||| || || Sbjct 15185500 CTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTGGCCTCGTTCGG 15185441 Query 31976 GTCGAAGAGCGACCATGCGACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCA 32035 | |||||| | ||| | | | |||||| || |||| ||| || |||||| | ||| Sbjct 15185440 GCAGAAGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCA 15185381 Query 32036 CATCGCGTAAAACAGATTCCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAG 32095 | ||||| || || | | |||||| ||||| || ||||| |||||| Sbjct 15185380 GAGGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTC 15185321 Query 32096 CAGGAAGTCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG 32155 | ||||||| || ||||| ||| ||||||||||||| |||||| || |||||||| Sbjct 15185320 AATGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCG 15185261 Query 32156 ---GCGACCCCCCTGGTTTGCGTATGCAGATGTCGTGTCGT---ACACCTTCAGCATGGG 32209 || || ||||||| |||| || | | ||||||| | || ||||| || Sbjct 15185260 CTTGCCGCCGCCCTGGTCCACGTA-GCGG--GCGGTGTCGTTGAAGACGCGAAGCATAGG 15185204 Query 32210 TACGATGCCATCAGACTCGCCATTGGTCCCCTGGATCTTGGAACCACGGCCGCGAATGTC 32269 || ||||| | |||| ||| ||||| || || | | || | |||| |||| Sbjct 15185203 CACAATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGGCGCGGATGTT 15185144 Query 32270 GCTCAGGTGCAGGCCGATGCCGCCACCAAACTTGGAAAGCTGTGC-AACGTCACCAAGAG 32328 | | || | |||||||||||| | ||||||| | | || | ||| | || | Sbjct 15185143 GTGGATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTC-TCGAGCG 15185085 Query 32329 ACTTGAAGATGTTGGTGAGCGAGTCATC---CACGTGGACAAGGAAACAGCTTGCAAGAT 32385 || ||||||| || |||||| || || ||| || ||||| ||||| | | || Sbjct 15185084 TCTGGAAGATGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCT--CGACAT 15185027 Query 32386 TGGC--ATTTCTGAACCCTGCATTGAACAGGGTCGGGCTCGCATGCGT---GAACTTGCG 32440 | || | || || ||||| |||||||| | || ||||| |||||| Sbjct 15185026 TTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTT--- 15184970 Query 32441 CTTGGAAAGAGCATCGTAGGTTTCCTTCACCTTCGCGATGTCTTCTCCCCAGAGAGCGAT 32500 || || | |||||||| || | | ||||||| | || ||| Sbjct 15184969 CTGCGACATCATGTCGTAGGTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGAC 15184910 Query 32501 CGCCACGCGCAAATACGTGTGCTGGGGGCGCTCTACGACCTTGCCATCCACCTTGGTCAG 32560 | ||||||| | ||||||| |||||||| ||| |||||| || |||||| ||| Sbjct 15184909 GGAGACGCGCATGAGCATGTGCTGCGGGCGCTCGGCGATCTTGCCGTCAACCTTGAGCAG 15184850 Query 32561 GTAGAGGCGCTTCATGGTTGAGAAGCCAAAGTAGTCAAAGTCATAGTCGCGGTCGTATTT 32620 ||| ||||| | || |||||| ||| |||| | || ||||||||||||| || Sbjct 15184849 GTACGAGCGCTCGAGCGTCTTGAAGCCGAAGAAGTCGTACTCGAAGTCGCGGTCGTACTT 15184790 Query 32621 GAC 32623 ||| Sbjct 15184789 GAC 15184787 >seq1824 Length=63427 Score = 165 bits (182), Expect = 2e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| || |||||||| || |||||||| || ||| | Sbjct 54712 CCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 54771 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | ||||| || || || Sbjct 54772 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGG 54831 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||| ||| |||||| ||||| | | || || Sbjct 54832 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACA 54891 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTG 68458 || | ||||||||| || |||||||||||||||||||| ||||| Sbjct 54892 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTG 54935 >seq1811 Length=963003 Score = 163 bits (180), Expect = 5e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| ||||| ||||| | || | ||| || |||||||| || |||||||| || ||| Sbjct 705978 TCCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 706037 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | || || || | |||||| |||||||| ||||| | ||||| || || || Sbjct 706038 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCAGGGGG 706097 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTA 68412 ||||| |||||||| || ||||| ||| ||| |||||||||||| ||| | || | Sbjct 706098 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTC-GCTGGGCTCAA 706156 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | ||||||||| || || ||||| ||||||||||| |||||||| Sbjct 706157 CGTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 706205 >seq1721 Length=237271 Score = 150 bits (166), Expect = 3e-31 Identities = 304/442 (69%), Gaps = 18/442 (4%) Strand=Plus/Minus Query 9972 TCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCG 10031 ||||| ||||||| |||||||| | ||| || || ||||| ||||||||||||||| Sbjct 46851 TCGAAAAAGTTGGTCTTGCCCTGCATGGAGATCAGGTCCATCCAGTCAAAGGGGTTCTGC 46792 Query 10032 GCGCC--AAACTGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGA 10089 |||| | | || | | | ||||| || ||| | |||||| || ||||||| || Sbjct 46791 ACGCCGTAGATGGCCTTGC--AGCCGAGAGCCTTGACGAGGCGGTCCGCGACGAACTTGA 46734 Query 10090 TGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAA 10149 ||||||| ||| ||| |||||||||||||| | | ||||| ||||| | | Sbjct 46733 TGTACTGCTGCATGAGGCTGGAGTTCATGCCAATGAGCTCGACGGGGAGCGCGTCCGAGA 46674 Query 10150 TGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGCTCTTTACCACG----TCAAGG 10205 ||||||| ||| | |||| || || || ||| ||| | | || || | Sbjct 46673 TGAAGTCGCACTCGATCTCGACGGCGGACTTGATGAT-CTCGTGCACGCGGGCCTCGCTG 46615 Query 10206 GACAGCTTGTTCTCGAGCTT-CGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTC 10264 | | | ||| | |||||| || | | || || |||| | ||| | |||||| Sbjct 46614 GGCGGGTTGAT---GAGCTTGCGGA-AGAGCAGGCAAGCAAAGTCGGTGTGCATGCCCTC 46559 Query 10265 GTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAG 10324 |||||||||||| | ||| ||||| || ||||| |||||||| || || || || Sbjct 46558 GTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGCATGAGGCCGCGCTTCTTGAG 46499 Query 10325 CCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCG 10382 |||||| |||||||| || || || ||||| ||||| ||||| ||| | | | || Sbjct 46498 CCAGAAGATGGCGCAAAAGGAGCCCGAGAA--GAAGATGCCCTCGACGGCCGCAAAACCG 46441 Query 10383 ACGAGGCGCTCTGCGAAGGAGC 10404 ||||||||||| || |||| || Sbjct 46440 ACGAGGCGCTCGGCAAAGGTGC 46419 >seq1817 Length=459392 Score = 120 bits (132), Expect = 6e-22 Identities = 238/347 (69%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 176165 GCCGTCATCCTCGAGGTAGTTCAGCAGACGC-TCGTCGGCCTTGTGGAAAATATCCCGGG 176223 |||||| ||||||||||||| || || ||| |||||| || |||||||| || | Sbjct 224930 GCCGTCGTCCTCGAGGTAGTCGAGGAG-CGCGTCGTCGTGCTCGTGGAAAAGCCTGCGCG 224872 Query 176224 TGTTGGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAA 176283 || || | || | || || || || | || || || ||||||||| ||| ||| Sbjct 224871 TGAGAGGCGCGAGGCGCGTAAAAATGTAACGCGCCGAGGCCGCGTCCTTGCCGCCGAGAA 224812 Query 176284 GGCGGGAACCGAATTGTCCGC-GAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAG 176342 ||| |||||||| || |||| | |||||| ||| |||||||| ||||| ||||| || Sbjct 224811 TGCGCGAACCGAACTGGCCGCTGGGGAAGA-GCAGGTTGATGTTGTTCGAGCCCACAAAG 224753 Query 176343 TCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCG 176402 || ||||| | ||| || | | || || |||| |||||||| || | | | Sbjct 224752 GTCTGCGCCATGCTGACGATCGTCGACGACAGCGAGACCTCACCGTGGTGGTACGCCGAG 224693 Query 176403 TTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTC 176462 | ||| ||| || | | ||||||||| ||||| || ||| |||||||| Sbjct 224692 TGCTCCGAGACGTAGCCAACGAGCTGCGCGACCTTGATGTCCGACTTGAGCTTGCGCTTG 224633 Query 176463 AACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGAC 176509 || | || || | ||| |||||||||||||| || || ||||| Sbjct 224632 AAGCAGGCAAAGAGCACCTTGCGCTGCGAGGGCTTGAGGCCGTCGAC 224586 >seq418 Length=4586 Score = 113 bits (124), Expect = 8e-20 Identities = 137/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||||||||||| ||||| |||| |||| ||||| | ||| || |||||||| Sbjct 3714 TAGCGCCACTGGATGTACTCGTTGGCGGTCTTGTCGAGGTGCTGCTCGATGTGGTGGAAG 3655 Query 225038 GCATGCTGGGCTACGTACGC-CATGCGCATGTTGGGATGCTTCCACACAGAGCCC--CGA 225094 || |||||||| ||||| || | ||| ||| || ||||| | | || ||| ||| Sbjct 3654 GCGTGCTGGGCGACGTAGGCGAACTTGCA-GTTCGGGTGCTTGAAGATAGTACCCTTCGA 3596 Query 225095 GTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 | || | |||||||||||||| |||||| | || | |||||| ||||| |||| | Sbjct 3595 G--GGCTTGAACTCGCCGGTGAGGAGCTTGATCATGGTGGACTTGCCGGCACCGTTGGCG 3538 Query 225155 CC 225156 || Sbjct 3537 CC 3536 >seq215 Length=7966 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 32097 AGGAAGTCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCGG 32156 || ||||| | || ||| |||||||| |||| |||||| || ||||| |||||||||||| Sbjct 936 AGAAAGTCGAGGAGGTCCGGGTGGTGCGGCTGGAGGTAGACCGCGAAGGATCCCTTGCGG 877 Query 32157 CGACCCCCCTGGTTTGCGTA 32176 |||||| ||||||| |||| Sbjct 876 CGACCCGCCTGGTTCACGTA 857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921601122042840