Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1811 167 6e-36 seq1824 125 2e-23 seq1817 93.3 1e-13 seq1537 86.0 1e-11 >seq1811 Length=963003 Score = 167 bits (184), Expect = 6e-36 Identities = 183/242 (76%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 288232 ATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGG 288291 ||| | | |||| |||||||||| || | ||| ||||| || | ||| || || ||| Sbjct 705965 ATGGTACTTACA-GTCCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGG 706023 Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351 || || |||||| ||||||||| ||||| || | || || || |||||||| |||||| Sbjct 706024 ATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGC 706083 Query 288352 TGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411 |||||| | ||||| || || || |||||||| ||| |||||||| || || | Sbjct 706084 TGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTG 706143 Query 288412 TCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 ||||| | || || ||||| ||||| ||||| ||||| || ||||||||||| |||||| Sbjct 706144 TCGCTGGGCTCAACGTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGC 706203 Query 288472 AT 288473 || Sbjct 706204 AT 706205 >seq1824 Length=63427 Score = 125 bits (138), Expect = 2e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || ||||| || | ||| || || ||||| || |||||| | Sbjct 54712 CCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 54771 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||| || ||||||||| | ||| Sbjct 54772 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGG 54831 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | |||||||| || || | || | || || Sbjct 54832 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACA 54891 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG 288470 ||||| ||||| ||||| || || || ||||||||||| ||||| Sbjct 54892 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTG 54935 >seq1817 Length=459392 Score = 93.3 bits (102), Expect = 1e-13 Identities = 244/367 (66%), Gaps = 4/367 (1%) Strand=Plus/Minus Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023 ||||| ||||||||||| || || ||| || || | | || || || | || Sbjct 224185 ACGATGGGCGTGATGAAGACCTGCAGGAAGCCGGGCACCTTGAGCAGCGAGGGCCAGAAG 224126 Query 326024 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 326083 |||| ||||||||||| || || |||||| | || || ||| || ||| Sbjct 224125 TGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTGCGAGCCATCGTGGTCCTGATCAGTC 224066 Query 326084 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGA 326143 |||||||| | || ||||| || || ||||| ||| || || | || Sbjct 224065 ATGATCATGAGGTGGCCGTAGCGCAGACCCTTGGTGTCGGCGTAAGTCTTGCCCGGCTGG 224006 Query 326144 AGGCCGAGAATTTGTTTGAGCG-CTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACG-G 326201 ||||| | || | ||| ||| |||||| ||||||||| |||| || ||| | | Sbjct 224005 AGGCCCATGATCTTCATGATATTCTG-GATTTCCTCGTTCTTCATGAT-CTGGCCGTGCG 223948 Query 326202 ATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGAC 326261 | || ||||||||||| | || || ||||| | || || || || || | ||||| | Sbjct 223947 AGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAAGGGAAAGACGCCGTAGTTGTCGCGGC 223888 Query 326262 CGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGA 326321 |||| ||| ||||| ||| || || ||| |||||| || ||||| || || |||| Sbjct 223887 CGACGACGCTGAGCCCGCTGATGGCGAGCGTCTTTGCGGAGTCACCCTCGGTGAGGATGA 223828 Query 326322 GAGTGCA 326328 ||||||| Sbjct 223827 GAGTGCA 223821 >seq1537 Length=224974 Score = 86.0 bits (94), Expect = 1e-11 Identities = 211/315 (67%), Gaps = 9/315 (3%) Strand=Plus/Plus Query 325343 TCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACA--ACCAGTTGATGT 325400 ||||| |||||||||| || || |||||||||||| || ||| | | | || | Sbjct 202767 TCCTTGCCACCCTGCAGTCGCGTGCCGAACTGGCCCGAGGGGTACAGGAGCGG--GAGAT 202824 Query 325401 TATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA-TGCTTCG 325459 | ||||| || ||| | ||||| || | ||| |||||| |||||| ||| || Sbjct 202825 TGTTGCTGCCCACAAAGTCCTGCGCCATGTTGGTGATGGTGGAGGTCAGAGACTGC-TCA 202883 Query 325460 CCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTC- 325518 || ||||| |||||| | ||||| | || ||| || ||| || ||||| | || Sbjct 202884 CCGTGGTGGTAGGCGGTCTGCTCGCCGACAACGCCGGCGAGCTGGGCCACCTTGAGCTCT 202943 Query 325519 --GGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAA 325576 || | | |||||||| | || | | | | || || || || || ||||||| Sbjct 202944 GAGGACACGAGGTTGCGCTTAAGCGCGGCAAAGAGGACCTTGCGCTGCGAGGGTTTGAGG 203003 Query 325577 CCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCC 325636 || |||| | ||||||| | ||| || |||| |||| | | || || | || || || Sbjct 203004 CCGTCAATGCCCGACGGGACGCTGCGCCCCAGGTCGTGCTGGGAAAAGAGAACGAGCTCT 203063 Query 325637 TTGTCGATGAAGTCG 325651 || | || ||||||| Sbjct 203064 TTATTGACGAAGTCG 203078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179626483847266