Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1679 226 3e-54 seq1721 120 4e-22 seq1817 105 8e-18 >seq1679 Length=19720504 Score = 226 bits (250), Expect = 3e-54 Identities = 1115/1747 (64%), Gaps = 57/1747 (3%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || || ||||||| || |||||||| || ||||||| | || | || ||||| Sbjct 15186612 CGCAGATAGTACAATCCGGTCTTGAGACCGCGCTTCCACGAGTAAAAGTGGCACGAGGTG 15186553 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | |||| || || | ||||| ||| ||| | || || || ||||||||| Sbjct 15186552 AGCTTGCTGACGGTGGCGTCGGCCATGTAGATGTTGAGCGACTGCGACTGGTCGATGAAG 15186493 Query 113717 CGTCCACGATCCGCCGCCATATCAATCA--CATCCTTCATCTTGATTTCCCACACAGTTC 113774 || ||||| || || | ||| || | || | | |||||| ||||| || || Sbjct 15186492 GCGCCGCGATCGGCGGCGAGATCGATGAGGCAGCGCTG--CTTGATCTCCCAGACGGTCT 15186435 Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCT 113834 ||||||| ||| | || || ||||| | | | || || | ||||| | | Sbjct 15186434 TGTAGAGCGCCTTGAGGTCGTCGGGGATGGCGCCAACGTTCTGCACCGAGCCGCGGTC-- 15186377 Query 113835 TGACCATGAGATCCTTC---ATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCA 113891 | |||||| | || || || | ||||||||| | |||| |||| | Sbjct 15186376 -GGCCATGATCTGGTTGCGGATGGCCGGGGTCCAGAGACCGCGCGAGATGAGGTCCTTGA 15186318 Query 113892 CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 113951 || || | ||||| || ||||| || |||||| ||| | | || || ||| Sbjct 15186317 GCAGGTGTGTGTTGACGACCGTGAACTCGCCAGCGAGGACGCGGCGCGAGTACATGTTGC 15186258 Query 113952 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCA 114011 | ||| | ||||||||| ||| ||| || | || || | ||| ||||| ||||||| Sbjct 15186257 TGGTGAAGGGCTCAAAGGCCTCGCAGTTGCCGAGAATCTGCGAGGTCGAGGCCGTGGGCA 15186198 Query 114012 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGT 114071 |||| || | || || |||||| | ||| | | | | | ||| | || | | Sbjct 15186197 TGGGCGCGACCAGCAGCGAGTTACGCACACCGTGCTGCATGACGCGCTGACGCAGCGTCT 15186138 Query 114072 CCCAGTCGTAGTTGAGCT------TTGTCTCCCCCTGCCACATATCAAACTGGAGGATAC 114125 ||||||| || ||||| | | || | | | ||| | || ||||||| | | Sbjct 15186137 CCCAGTCCCAGCCGAGCTCCGGGTTGGGCTTCTCGTTCCAGAGGTCGAACTGGAACTTGC 15186078 Query 114126 CTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGG 114185 | | | ||||| || ||| |||| ||| |||||||| ||| ||||| ||| Sbjct 15186077 CCTCGCTCATGGGCGACCCGGAAAAGGTCTGGTACGGGCCCTCCTCCTGCGCCAGCTCGC 15186018 Query 114186 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATG-CGAGCATTCA--TTGCCT 114242 | || | ||| | || || ||||| || ||| || | || | |||| Sbjct 15186017 ACGAGGCGGTGCAGGCGCCAAAGTAGATGGTCTCGAAGATGTCGCGG-TTGAGCTTGCG- 15185960 Query 114243 TGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGA 114302 |||||| | ||||| | || || | || | ||| ||||| || || | Sbjct 15185959 -GGCCTCCGGGCTCTCAAAGGGGAAGCGCAGCTCCATGAGCGCATTGGCGAGGCCCTGAA 15185901 Query 114303 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGAT 114359 | || | ||| || ||||| || | | | || | || ||| |||| ||||| | Sbjct 15185900 CGCCAATGCCGATGGGGCGGTGGCGCGTGTTGC---TGCGCTCGGCCTCCTCGACGGGGT 15185844 Query 114360 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 114419 | || || | ||||| || | || || || |||||||| ||||| |||| || | | Sbjct 15185843 AGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGTGACATCGTAGA 15185784 Query 114420 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGCGATTG 114476 | | | | || | ||| ||| ||| ||||| |||| | ||| ||| | Sbjct 15185783 GGGCCTGGAAGTCGTAGGTGCC---CTCCTCAATGTTGACGAACTTGCGCAGGTTGATGG 15185727 Query 114477 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACA 114536 | || || || || || | | ||| || | | |||||| || || || || |||| Sbjct 15185726 AGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGATCTCGGTGCACA 15185667 Query 114537 AATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 114596 || || ||| ||| |||| | |||||| || || ||||| ||| || || |||| Sbjct 15185666 GGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCT 15185607 Query 114597 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 114656 || | |||||| | ||| || ||||| | ||| | | || || | ||||| | Sbjct 15185606 TGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTGGTACCAGAGGT 15185547 Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716 | ||| ||| || | | | || ||||||| |||||| |||||| | | Sbjct 15185546 CCTGGGCGCGCATGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTCGTAGAGCTCCT 15185487 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAG-CCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 114775 ||||| || || | | || ||||| |||| | |||| | ||||||||||| | | Sbjct 15185486 TGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTG-GCCTCGTTCGGGCAGAAGAGGGTC 15185428 Query 114776 CATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAG 114835 || | |||| ||||||| ||| || ||||| |||| |||||| || ||||| Sbjct 15185427 CAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCAGAGGGCGTAGAAG 15185368 Query 114836 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 114895 || || || ||| | || || | || || || || | ||| | |||||| | Sbjct 15185367 AGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTCAATGAAGTCCTCG 15185308 Query 114896 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCC 114952 | || |||||||| || || ||||||| |||| || ||||| || | || || Sbjct 15185307 ACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCTTGCCGCCGCCC 15185248 Query 114953 TGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGAT 115012 |||| || || | || ||| | || || ||||||||||| || | || || | || Sbjct 15185247 TGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAATGCCGTTCGAC 15185188 Query 115013 TGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCATGGATGTGCATAC 115070 ||||| || || || ||| || | | | ||| | || | ||||||| | | Sbjct 15185187 TGGCCGTTGGTGCCGGCGACGTAGCTGCCCGA--GGCGCGGATGTTGTGGATGTTGACGC 15185130 Query 115071 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC-TC-CGTGAGACTGCCGTAGATCCC 115128 | || || || || |||| ||||| ||||||| || || | | ||| | |||| || Sbjct 15185129 CGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGTCTG--GAAGATGCC 15185072 Query 115129 GTCGATCGAGTCACCCTT-ATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 115187 ||||||||||| |||| || ||| | |||||||||||||||||||| || | || | Sbjct 15185071 CTCGATCGAGTCGTCCTTCATGTGC-ACGAGGAAGCAGCTCGACATTTGCGGGCGGGGGG 15185013 Query 115188 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCG 115246 | || |||||||||||||| || || ||||| |||| | || | || |||||| | ||| Sbjct 15185012 TGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGA-ACTTCTGCGACATCATGTCG 15184954 Query 115247 TAGGTCTCCAAGACGGCGGGA---ATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 115303 |||||||| || |||| || ||||| | | ||| || |||| ||||| ||||| Sbjct 15184953 TAGGTCTC---GATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGACGCGCATG 15184897 Query 115304 AACATGT 115310 | ||||| Sbjct 15184896 AGCATGT 15184890 >seq1721 Length=237271 Score = 120 bits (132), Expect = 4e-22 Identities = 331/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||| ||||| ||||| ||||| || | || | ||| ||||| Sbjct 46870 GTACTCGCCGACGCGCTTTTCGAAAAAGTTGGTCTTGCCCTGCATGGAGATCAGGTCCAT 46811 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCA-ATCTGTTTGAGGAGA 125875 | ||||| ||||||| | | || | | ||| || | | | |||| ||| Sbjct 46810 CCAGTCAAAGGGGTTCTGCACGCCGTAGATGGCCTTGCAGCCGAGAGCC--TTGACGAGG 46753 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || |||| |||| ||| ||||||| ||| |||||||| || ||||| | Sbjct 46752 CGGTCCGCGACGAACTTGATGTACTGCTGCATGAGGCTGGAGTTCATGCCAATGAGCTCG 46693 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 |||||||||||| ||||||| | ||| || || ||||| | | ||| || Sbjct 46692 ACGGGGAGCGCGTCCGAGATGAAGTCGCACTCGATCTCGACGGCGGACTTGATGATCTCG 46633 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACG---GCAAAC 126052 || | | | || | | || ||| | | |||||| || | ||||| Sbjct 46632 TGCACGCGGGCCTCGCTGGGCGGGTTGATGAGCTTGCGGAAGAG---CAGGCAAGCAAAG 46576 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| | |||||||| ||| ||| | ||||| |||||| || || |||||| Sbjct 46575 TCGGTGTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGCATG 46516 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 || || |||||||| | |||||| || || ||||| || |||||||||||||| ||||| Sbjct 46515 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATGCCCTCG 46456 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAACCACTT 126231 || ||| || | | ||| ||||| ||||||| || || ||| ||| | | Sbjct 46455 ACGGCCGCAAAACCGACGAGGCGCTCGGCAAAGGTGC-AGATGTTGCCGTCCATGTAGCG 46397 Query 126232 CATCGCCCACTGCGCCTTTT 126251 ||| |||||||||||||||| Sbjct 46396 CATGGCCCACTGCGCCTTTT 46377 >seq1817 Length=459392 Score = 105 bits (116), Expect = 8e-18 Identities = 253/379 (67%), Gaps = 8/379 (2%) Strand=Plus/Minus Query 172573 CAACTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTG 172632 || |||||| || || |||||||||| |||||| | |||| || || ||||||||||| Sbjct 224150 CACCTTGAGCAGCGAGGGCCAGAAGTGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTG 224091 Query 172633 TGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAG---CTCGGA 172689 || ||||||| ||| ||| ||||| ||||| || | || ||||| || || || Sbjct 224090 CGAGCCATCGTGGTCCTGATCAGTCATGATCATGAGGTGGCCGTAGCGCAGACCCTTGG- 224032 Query 172690 AACATCTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTC 172749 || || ||| ||| | || || |||| ||||||| ||| || | || || Sbjct 224031 --TGTCGGCGTAAGTCTTGCCCGGCTGGAGGCCCATGATCTTCATGATATTCTGGATTTC 223974 Query 172750 TTGGTTTGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAG 172809 | ||| ||| || | || || |||||||| || ||| ||||| | Sbjct 223973 CTCGTTCTTCATGATCTGGCCGTGCGAGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAA 223914 Query 172810 AGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTT 172869 || || || ||||||| || || || || || || || | ||||| ||||| Sbjct 223913 GGGAAAGACGCCGTAGTTGTCGCGGCCGACGACGCTGAGCCCGCTGATGGCGAGCGTCTT 223854 Query 172870 CGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCT 172928 ||||| |||||||| || | |||||| || || || | || | ||| | | || || | Sbjct 223853 TGCGGAGTCACCCTCGGTGAGGATGAGAGTGCATTTGTCGGAGT-TGCGGCCGCCGGCGT 223795 Query 172929 TGTTCGCATCGTCCAACTT 172947 |||| || ||||| | ||| Sbjct 223794 TGTTGGCGTCGTCGAGCTT 223776 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 171953 AGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCG 172012 || || ||||| ||||| || |||| || | |||| |||| ||||| || Sbjct 224782 AGCAGGTTGATGTTGTTCGAGCCCACAAAGGTCTGCGCCATGCTGACGATCGTCGACGAC 224723 Query 172013 AGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCC 172072 || ||||| |||||||| ||||| ||||| | |||| ||| || | | | ||| || Sbjct 224722 AGCGAGACCTCACCGTGGTGGTACGCCGAGTGCTCCGAGACGTAGCCAACGAGCTGCGCG 224663 Query 172073 ACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAA 172132 ||||| || || |||||| || | |||||| ||| | | ||||| | ||| || Sbjct 224662 ACCTTGATGTCCGACTTGAGCTTGCGCTTGAAGCAGGCAAAGAGCACCTTGCGCTGCGAG 224603 Query 172133 GGCTTGAGGCCGTCGGCCATG 172153 ||||||||||||||| ||||| Sbjct 224602 GGCTTGAGGCCGTCGACCATG 224582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597339808598760