Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1679 471 4e-128 >seq1679 Length=19720504 Score = 471 bits (522), Expect = 4e-128 Identities = 1163/1736 (67%), Gaps = 76/1736 (4%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| | ||| | |||||| || || ||| |||||||| |||||| | || |||| | Sbjct 15184811 TACGACTTCTTCGGCTTCAAGACGCTCGAGCGCTCGTACCTGCTCAAGGTTGACGGCAAG 15184870 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 | ||||||| ||||| || |||| ||||||||| || |||| || ||| |||||| Sbjct 15184871 ATCGCCGAGCGCCCGCAGCACATGCTCATGCGCGTCTCCGTCGGCATCCACAAGCACGAC 15184930 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGA-----GACATGCGGGACAAGAGGTATACCATG- 93891 || ||| | ||| | | ||| |||||| | ||| || || | Sbjct 15184931 AT--CGA-----TCGCGC-CATCGAGACCTACGACATGATGTCGCAGAAGTTCTTCACGC 15184982 Query 93892 --GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCC 93949 ||||| |||||||| |||||||| || ||||| || || ||||| || |||| Sbjct 15184983 ACGCCACGCCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCAAATGTCGAGCTGCTTCC 15185042 Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 | || | |||| |||||| ||| || || ||| | | ||| || ||| ||| Sbjct 15185043 TCGTGCACATGAAGGACGACTCGATCGAGGGCATCTTCCAGACGCTCGAGACCTGCGCGC 15185102 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 |||||| || ||||| || || ||||| ||| ||||| || | || ||| ||| Sbjct 15185103 GCATCTCCAAGTACGCCGGCGGCATCGGCGTCAACATCCACAACATCCGCGCCTCGGGCA 15185162 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 |||| || ||| ||||| ||| || |||||| | || |||||||| || ||||||| Sbjct 15185163 GCTACGTCGCCGGCACCAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGCGTCTTCA 15185222 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 || || | || ||||||||||||||||| || || | | | ||||| || ||||| | | Sbjct 15185223 ACGACACCGCCCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATGT 15185282 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | |||||||| |||||||| ||||| ||| ||||| || || || ||||||||||||| Sbjct 15185283 ACCTCGAGCCTTGGCACGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAACCACGGCA 15185342 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || || | ||| | |||||||||||||| |||||||| || |||||||||||| Sbjct 15185343 AGGAGGAGGTCCGCGCCCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTTTTTATGC 15185402 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCC--CGGACT 94367 | || |||||| ||| | |||||| || || || || || || | || || || Sbjct 15185403 AGCGTGTCGAGGCCAACAGCACCTGGACCCTCTTCTGCCCGAACGA--GGCCAAGGGCCT 15185460 Query 94368 GTCCGACGTTTGTGGATCG-CGTTTTGAA-GACTTGTATGCTCGTTACGAATCGCAGGGC 94425 || || || | || || || || || || | || | || ||||| | ||||| Sbjct 15185461 CTCGGATGTCTACGG--CGACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAGGGC 15185518 Query 94426 AAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 | | | ||| ||| || | | || ||| | |||||| || | ||| | Sbjct 15185519 CGCGGCCGCAAGACCATGCGCGCCCAGGACCTCTGGTACCAGATCCTGAGCTGCCAGATC 15185578 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 ||||| || ||| | ||| | ||||||||| | |||| |||||| |||||| || Sbjct 15185579 GAGACCGGCGTGCCGTTCATGCTCTTCAAGGACGCCTGCAACCGCAAGTCGAACCAGAAG 15185638 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 ||||||| | |||||| |||||| |||||||||||||| ||||||| | | || Sbjct 15185639 AACCTCGGCATCATCAAGTCCTCGAACCTGTGCACCGAGATCATCGAGTACTCGGCCCCT 15185698 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA----GA 94661 |||||| | || || || ||||| | ||||||||||||| || ||||| | | || Sbjct 15185699 GACGAGGTCGCCGTCTGCAACCTCGCCTCCATCAACCTGCGCAAGTTCGT-CAACATTGA 15185757 Query 94662 TGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGAT 94721 | ||| |||| |||| | || | || ||| | | |||| | Sbjct 15185758 GGAGGGCAC--CTACGACTTC-CAGGCCCTCTACGA---TGTCACC--------AAGG-T 15185802 Query 94722 GGT---CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGA 94778 || | |||||| ||| | || |||||| ||||||||||||||| |||||| || Sbjct 15185803 CGTCACCAAGAACCTCAACCGCGTCATCGACGGCAACTTCTACCCCGTCGAGGAGGCCGA 15185862 Query 94779 GAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCT 94838 | | ||| | || || ||||||||||| ||||| ||||| |||| | ||||| Sbjct 15185863 GCGCAGCAACACGCGCCACCGCCCCATCGGCATTGGCGTTCAGGGCCTCGCCAATGCGCT 15185922 Query 94839 GGTGATGATGCGTCTGCCCTACGACTCTGTCGACG-CGGCGGGTTTGAATTTGAACATAT 94897 || | |||| | |||| || || | | || | | || |||| | Sbjct 15185923 CATGGAGCTGCGCTTCCCCTTTGAGAGCCCGGAGGCCCGCAAG-CTCAACCGCGACATCT 15185981 Query 94898 TCGAAAGCATTTATTACGGGGCCATGAAACAATCCGT-CCACTTGGC-CAGATCGGACGG 94955 |||| | ||| || | || ||| || | | ||| | | |||| || ||| | Sbjct 15185982 TCGAGACCATCTACTTTGGCGCC-TGCACCGCCTCGTGCGAGCTGGCGCA----GGAGGA 15186036 Query 94956 CGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCT 95015 || || || | | || ||| |||||| || |||||| || ||||||||||| Sbjct 15186037 GGGCCCGTACCAGACCTTTTCCGGGTCGCCCATGAGCGAGGGCAAGTTCCAGTTCGACCT 15186096 Query 95016 CTGGGGTGTGAAGCC---CTCGGGTCT---GTACGACTGGGAAGCTCTAC----GCGCTG 95065 |||| | |||||| | ||| || | |||||||| | || | |||| Sbjct 15186097 CTGGAACGAGAAGCCCAACCCGGAGCTCGGCTGGGACTGGGAGACGCTGCGTCAGCGC-- 15186154 Query 95066 ATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCA 95125 || || | ||||||||| ||| ||||||| || || ||||||||||||||||| | Sbjct 15186155 --GTCATGCAGCACGGTGTGCGTAACTCGCTGCTGGTCGCGCCCATGCCCACGGCCTCGA 15186212 Query 95126 CGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACA 95185 | ||||||| || |||||| |||| | || || ||||||||| |||| ||||| Sbjct 15186213 CCTCGCAGATTCTCGGCAACTGCGAGGCCTTTGAGCCCTTCACCAGCAACATGTACTCGC 15186272 Query 95186 GGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGT 95245 | || || ||||| || || ||| | ||| |||||| ||||| || |||||| | | Sbjct 15186273 GCCGCGTCCTCGCTGGCGAGTTCACGGTCGTCAACACACACCTGCTCAAGGACCTCATCT 15186332 Query 95246 CTCTGGGTGTGTGG--GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGT 95303 | | ||| | ||| | | | || ||||| | | || | |||||| || Sbjct 15186333 CGCGCGGTCTCTGGACCCCGGCCA--TCCGCAACCAGATCATGGCCGACCGCGGCTCGGT 15186390 Query 95304 CCAGAAC-ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGA 95362 |||||| | ||| || || || ||| |||||||||||||||||||||| ||||||| Sbjct 15186391 GCAGAACGTTGGCGC-CATCCCCGACGACCTCAAGGCGCTCTACAAGACCGTCTGGGAGA 15186449 Query 95363 TCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 || ||||||| | |||| | ||| |||| ||||| |||||||| |||| Sbjct 15186450 TCAAGCAGCGCTGCCTCATCGATCTCGCCGCCGATCGCGGCGCCTTCATCGACCAG 15186505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494711778078120