Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1679 280 1e-70 seq1811 105 7e-18 >seq1679 Length=19720504 Score = 280 bits (310), Expect = 1e-70 Identities = 959/1475 (65%), Gaps = 41/1475 (3%) Strand=Plus/Minus Query 153006 ATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTC 153065 |||||||| | || || || |||||| || |||||||| || | || || | | Sbjct 15186330 ATGAGGTCCTTGAGCAGGTGTGTGTTGACGACCGTGAACTCGCCAGCGAGGACGCGGCGC 15186271 Query 153066 AAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTG 153125 | || | ||||| ||||| || ||||||| ||| ||||| || || || | || Sbjct 15186270 GAGTACATGTTGCTGGTGAAGGGCTCAAAGGCCTCGCAGTTGCCGAGAATCTGCGAGGTC 15186211 Query 153126 GTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCG 153185 | || || |||||| ||| |||| || || || |||| |||||| | ||| || Sbjct 15186210 GAGGCCGTGGGCATGGGCGCGACCAGCAGCGAGTTACGCACACCGTGCT---GCATGACG 15186154 Query 153186 TCCTT---CAACGCCTGCCAATCCCAC---AGCGCCGAC---GGTGTCGCGTTCCACATG 153236 || || || || ||| ||||| ||| ||| || || ||||||| | | Sbjct 15186153 CGCTGACGCAGCGTCTCCCAGTCCCAGCCGAGCTCCGGGTTGGGCTTCTCGTTCCAGAGG 15186094 Query 153237 TCGTACTGTAACACTCC-TCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTC 153295 ||| |||| ||| || ||| || ||| |||| ||| || ||| ||| || Sbjct 15186093 TCGAACTGGAACTTGCCCTCG-CTCATGGGCGACCCGGAAAAGGTCTGGTACGGGCCCTC 15186035 Query 153296 GCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC--GCGCCATAGTATATGGTTTCGGCGATT 153353 || ||||| ||||| | || | | || |||||| |||| ||||| ||| ||| Sbjct 15186034 CTCCTGCGCCAGCTCGCA-CGAGGCG-GTGCAGGCGCCAAAGTAGATGGTCTCGAAGATG 15185977 Query 153354 TGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCG 153413 | ||||| | || || |||||| | || | ||||||| || | || Sbjct 15185976 TCGCGGTTGAGCTTGCGGGCCTCCGGGCTCTCAAAGGGGAAGCGCAGCTCCATGAGCGCA 15185917 Query 153414 TCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCG 153473 | ||| || ||||| | || | ||||||||| || || | |||||||||| ||| Sbjct 15185916 TTGGCGAGGCCCTGAACGCCAATGCCGATGGGGCGGTGGCGCGTGTTGCTGCGC-TCGGC 15185858 Query 153474 CTCG-CTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTT 153532 ||| | | ||| ||| |||| ||||| | ||||||||| || || || Sbjct 15185857 CTCCTCGACGGGGTAGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTT 15185798 Query 153533 AGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATT 153592 || | | | || || ||| || ||||| || || | | ||| | Sbjct 15185797 GGTGACATCGTAGAGGGCCTGGAAGTCGTAGGTGCCCTCCTCAATGTTGACGAACTTGCG 15185738 Query 153593 CACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGAT 153652 || | || || || || || |||||||| ||| || | | | ||||| | ||| Sbjct 15185737 CAGGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGAT 15185678 Query 153653 CTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATT 153712 ||||| ||| ||||| | | || |||| ||| | || | ||| || ||||| || Sbjct 15185677 CTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTT 15185618 Query 153713 GCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGA-CTTGCGTTTCGACGATAA 153771 ||| ||||| |||||||||||| |||| |||||||||||| || || || | ||| Sbjct 15185617 GCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTC-AGGATCT 15185559 Query 153772 ---ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATC 153828 ||| |||||||| || |||| || || ||||||||| ||||||| | Sbjct 15185558 GGTACCAG---AGGTCCTGGGCGCGCATGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGC 15185502 Query 153829 GCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCG 153888 ||||||| || || ||||||||||||||| || | |||||| || | || Sbjct 15185501 GCTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTGGCCTCGTTCG 15185442 Query 153889 GACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCC 153948 | || | || | ||| | || ||| | ||| || |||| || || || || |||| Sbjct 15185441 GGCAGAAGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCC 15185382 Query 153949 AGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGA- 154007 |||| ||||| | ||||||||| || | |||||| ||| ||| || | || Sbjct 15185381 AGAGGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTC--TTGCGGAG 15185324 Query 154008 -TTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTT 154066 | | | | | || |||||||||||| || || | ||| | ||| | || || || Sbjct 15185323 CTCAATGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTT 15185264 Query 154067 ACGCTTTCCGCC---CTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123 ||||| ||||| ||| || |||| ||| | | | |||||||||||| | ||| || Sbjct 15185263 GCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGG 15185204 Query 154124 TTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTG 154183 | | |||| | | ||||||||| || | |||||| |||||| | | Sbjct 15185203 CACAATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGGCGCGGATGTT 15185144 Query 154184 ATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGT 154243 || | ||| ||||| ||||||||| ||||||| || ||| |||||| | ||||| Sbjct 15185143 GTGGATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGT 15185084 Query 154244 CCTGTAGATGCCGTCGATGCTATCGTCGCGGACGC---CGAGCAAGAAACACGAACACAT 154300 | | ||||||| ||||| ||||| | | |||| ||| | | ||| ||| Sbjct 15185083 CTGGAAGATGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGA---CAT 15185027 Query 154301 TTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTG 154360 |||||| | | || || || |||||||| || | |||||||| || | || || Sbjct 15185026 TTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTG 15184967 Query 154361 GCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGC 154420 ||||||| ||| || ||||||||| ||||| || | ||| ||||||| | Sbjct 15184966 CGACATCATGTCGTAGGTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGA 15184907 Query 154421 GACGCGCATGAGCATGTGCTGCGGACGTTCGGCGA 154455 |||||||||||||||||||||||| || ||||||| Sbjct 15184906 GACGCGCATGAGCATGTGCTGCGGGCGCTCGGCGA 15184872 >seq1811 Length=963003 Score = 105 bits (116), Expect = 7e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || ||||||||| || || |||| Sbjct 706012 GACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 706071 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||||||||| || || || || || || ||||| ||| || || || | Sbjct 706072 AAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 706131 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||| || |||| || | || || || || || || || Sbjct 706132 TTCTCGATGGTGTCGCTGGGCTCAACGTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTG 706191 Query 138601 ACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 706192 ACGAAGATCTGCATGG 706207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250942541840