Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1679 150 2e-31 seq1811 127 2e-24 seq1721 93.3 4e-14 seq1824 89.7 5e-13 >seq1679 Length=19720504 Score = 150 bits (166), Expect = 2e-31 Identities = 340/500 (68%), Gaps = 22/500 (4%) Strand=Plus/Minus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCC---GGTTTTGTGCGCAGATAGTACATGCC 145775 |||||||||||| || | || | ||||| || |||||||||||||||| || Sbjct 15186652 GTCGACGGTGAATTGGATAGCAT---CGGCCTTGGGGCGCGTGCGCAGATAGTACAATCC 15186596 Query 145776 GGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGACCGAGT--ACG-T 145832 ||||||||| || ||||| ||||||||| || ||| ||| | | ||| | Sbjct 15186595 GGTCTTGAGACCGCGCTTCCACGAGTAAAAGTG---GCACGAGGTGAGCTTGCTGACGGT 15186539 Query 145833 GGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCC-CGGTCGG 145891 || ||||| | | | || || || || ||| || ||||| || ||| || |||| Sbjct 15186538 GGCGTCGGCCATGTAGATGTTGAGCGACTGCGACTGGTCGATGAA-GGCGCCGCGATCGG 15186480 Query 145892 CGGCCATGTCTATCATGCA-CTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTG 145950 |||| | || || | ||| | || || | | ||||| |||| || |||| ||||| Sbjct 15186479 CGGCGAGATCGATGAGGCAGCGCTGCTTGA-TCTCCCAGACGGTCTTGTAGAGCGCCTTG 15186421 Query 145951 ACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTG 146010 | || | ||| || || ||| ||||||||| || || ||||||| || | |||| Sbjct 15186420 AGGTCGTCGGGGATGGCGCCAACGTTCTGCACCGAGCCGCGGTCGGCCATGATCTGGTTG 15186361 Query 146011 CGCAATTCTGGAGTGTAAAT---GTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTG 146067 || | | || || | | | | || | |||| |||||| || | |||| Sbjct 15186360 CGGATGGCCGGGGTCCAGAGACCGCGCGAG---ATGAGGTCCTTGAGCAGGTGTGTGTTG 15186304 Query 146068 ACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCG 146127 || ||| |||||||| ||||| ||||| | | |||| |||||||||||| ||||| Sbjct 15186303 ACGACCGTGAACTCGCCAGCGAGGACGCGGCGCGAGTACATGTTGCTGGTGAAGGGCTCA 15186244 Query 146128 AACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGC 146187 || | |||| ||| ||||| ||||||| |||| || || |||||| ||| |||||| Sbjct 15186243 AAGGCCTCGCAGTTGCCGAGAATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCGACCAGC 15186184 Query 146188 AAAGAGTTTCTCACGCCGTG 146207 | ||||| | ||| ||||| Sbjct 15186183 AGCGAGTTACGCACACCGTG 15186164 Score = 86.0 bits (94), Expect = 6e-12 Identities = 129/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 146613 AACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTT 146672 || ||||||| ||||| | | ||| ||||| | ||| || ||||| |||||| Sbjct 15185755 AATGTTGACGAACTTGCGCAGGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGG 15185696 Query 146673 GTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAttttt 146732 | | | |||| | ||||||| ||| ||||| | ||||||||||||| | || || Sbjct 15185695 GGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTT 15185636 Query 146733 ttGGTTACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 |||| | |||| |||||||| ||||||| |||||||| |||| | ||||| || Sbjct 15185635 CTGGT---TCGACTTGCGGTTGCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTC 15185579 Query 146790 GA 146791 || Sbjct 15185578 GA 15185577 >seq1811 Length=963003 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | || | ||| | || | || ||||| || || || ||||| |||| Sbjct 705978 TCCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 706037 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| || || ||||| || || ||| |||| | ||||| ||||| || || Sbjct 706038 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCAGGGGG 706097 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| |||||||| | | |||| |||||| | ||| || Sbjct 706098 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCAAC 706157 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| ||| | || |||||||| || || || || || |||||||||| Sbjct 706158 GTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATGG 706207 >seq1721 Length=237271 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 47068 TGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCA 47127 |||||||||||||| |||||| ||||||||||| ||||| || | | | | || Sbjct 46362 TGCCCTGCGTGCGCCAAAAGGCGCAGTGGGCCATGCGCTACATGGACGGCAACATCTGCA 46421 Query 47128 CTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCT 47187 | | ||||| || | ||| ||| || |||||||||| |||||||||||||| || Sbjct 46422 CCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCT 46481 Query 47188 TTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACG 47247 || || || || | | || | || | ||||| || ||||| || ||| | Sbjct 46482 TTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATG 46541 Query 47248 AGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT 47293 || | ||| | ||||| ||| |||||||| ||||||| || || Sbjct 46542 AGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGCTTGCCT 46587 >seq1824 Length=63427 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| | |||||| || || ||||| || || Sbjct 54742 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 54801 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||| ||||| || || ||||||||||||||| || || ||| Sbjct 54802 GCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTC 54861 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||||| |||||| |||| ||| | || || || || || || Sbjct 54862 ACGTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTC 54921 Query 127097 TTTACAAAAATCTG 127110 || || || ||||| Sbjct 54922 TTGACGAAGATCTG 54935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489821875280