Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1679 163 5e-35 seq1721 131 3e-25 >seq1679 Length=19720504 Score = 163 bits (180), Expect = 5e-35 Identities = 447/668 (67%), Gaps = 24/668 (4%) Strand=Plus/Minus Query 203884 CAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG 203943 ||||||||||| |||||||| || || || |||| ||| | ||| || | || Sbjct 15186610 CAGATAGTACAATCCGGTCTTGAGACCGCGCTTCCACGAGTAAAAGTGGCACGAGGTGAG 15186551 Query 203944 TTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGG 204003 ||||| ||| ||| ||||||||||| ||||| || ||||| ||||||||||| || Sbjct 15186550 CTTGCTGACGGTGGCGTCGGCCATGTAGATGTTGAGCGACTGCGACTGGTCGATGAA-GG 15186492 Query 204004 CGCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGA 204062 |||| ||||| ||||| | || ||| | | |||| |||||||| || |||||| Sbjct 15186491 CGCCGCGATCGGCGGCGAGATCGATGAGGCAGCGCTGCTTGATCTCCCAGACGGTCTTGT 15186432 Query 204063 ACA-CGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGC 204120 | | || || || || | || | | || |||| ||| | ||||||| |||||| Sbjct 15186431 AGAGCGCCT-TGAGGTCGTCGGGGATGGCG-CCAACGTTCTGCACCGAGCCGCGGTCGGC 15186374 Query 204121 CATCAGTCTCATCCTCG-TCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCA 204179 ||| | ||| | | | || ||| | || | ||| || ||| | || Sbjct 15186373 CATGA-TCTGGTTGCGGATGGCCGGGGTCCAGAGACCGCGCGAGATGAGGTCCTTGAGCA 15186315 Query 204180 GGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGG 204239 |||| | ||||| || | || || || | || || | || | | ||| |||| ||| Sbjct 15186314 GGTGTGTGTTGACGACCGTGAACTCGCCAGCGAGGACGCGGCGCGAGTACATGTTGCTGG 15186255 Query 204240 TGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGG 204299 |||| || || || |||||| |||||||| |||||| | ||| |||||||||||||| Sbjct 15186254 TGAAGGGCTCAAAGGCCTCGCAGTTGCCGAGAATCTGCGAGGTCGAGGCCGTGGGCATGG 15186195 Query 204300 GAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCT---TCAGAG--- 204353 | || | ||||| ||||| |||||||||| | ||| ||||| ||| | Sbjct 15186194 GCGCGACCAGCAGCGAGTTACGCACACCGTGCTGCATGAC---GCGCTGACGCAGCGTCT 15186138 Query 204354 ---AGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGC 204410 || |||| || || || |||| ||| || ||| | ||||||||| || ||| Sbjct 15186137 CCCAGTCCCAGCCGAGCTCCGGGTTGGGCTTCTCGTTCCAGAGGTCGAACTGGAACTTGC 15186078 Query 204411 CTTGACTGACTGGGCTGCCC-TTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTG 204469 | | || | ||||| ||| | ||| | || || ||||| | ||||||| | Sbjct 15186077 CCTCGCTCA-TGGGCGACCCGGAAAAGGTCTGGTACGGGCCCTCCTCCTGCGCCAGCTCG 15186019 Query 204470 CACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC- 204528 |||||||||| |||| | |||| |||||||| ||||| | || || | || || Sbjct 15186018 CACGAGGCGGTGCAGGCGCCAAAGTAGATGGTCTCGAAGATGT-CGCGGTTGAGCTTGCG 15185960 Query 204529 GGCCTCCG 204536 |||||||| Sbjct 15185959 GGCCTCCG 15185952 Score = 95.1 bits (104), Expect = 2e-14 Identities = 465/728 (64%), Gaps = 18/728 (2%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| | |||||||||||||| ||| | |||| | | || | | || |||||| || Sbjct 15185686 CTCGATGATCTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGA 15185627 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 ||||||||| |||| ||||||| | | ||||||||||| ||| |||| ||||| | | Sbjct 15185626 CTTGCGGTTGCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCT 15185567 Query 205003 CAGAATGTGGGTCCACAATTC----GCGAGCCTCCACTTGC-TTCACGTACATCCCTTGA 205057 ||| || ||| ||| | || ||| || | ||||| | || | ||| | Sbjct 15185566 CAGGATCTGGTACCAGAGGTCCTGGGCGCGCATGGTCTTGCGGCCGCGGCCCTCCTT--- 15185510 Query 205058 GACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCC-ATCAGCCCTGG 205116 |||||| ||| ||| || || || ||||| || ||| | ||||| | Sbjct 15185509 --CTCGTAGCGCTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTG 15185452 Query 205117 ACATTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACA 205175 | | || ||| || | || | ||| | ||| | | | | || | || |||||| | Sbjct 15185451 GCCTCGTTCGGG-CAGAAGAGGGTCCAGGTGCTG-TTGGCCTCGACACGCTGCATAAAAA 15185394 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 ||||| || ||| ||| |||| || || || ||||| | | | || | || ||| Sbjct 15185393 GGTCGGGGACCCAGAGGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGT 15185334 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295 |||| | || | | || | | |||||||||||| ||||| | ||| ||| | Sbjct 15185333 TCTTGCGGAGCTCAATGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGA 15185274 Query 205296 TTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTC 205355 | ||| | |||| || ||||||||||| ||| | | ||||||| || | Sbjct 15185273 AGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGC 15185214 Query 205356 GCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAG 205415 | ||||| ||||| | ||||| | ||||| |||| | || | ||| | Sbjct 15185213 GAAGCATAGGCACAATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGG 15185154 Query 205416 CCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-C 205474 | | | |||| |||| |||| || ||||| | |||||| ||| | ||||| Sbjct 15185153 CGCGGATGTTGTGGATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGG 15185094 Query 205475 TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCA-GTGTCACCAGATAGCA 205533 ||| | || || | ||||||| |||| || |||||| || ||| ||| || |||| Sbjct 15185093 TCTCG-AGCGTCTGGAAGATGCCCTCGATCGAGTCGTCCTTCATGTG-CACGAGGAAGCA 15185036 Query 205534 CGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAA 205593 | || | | | |||||| |||| |||||| || || ||||||| |||| Sbjct 15185035 GCTCGACATTTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAA 15184976 Query 205594 GCGCTTCT 205601 | ||||| Sbjct 15184975 GAACTTCT 15184968 >seq1721 Length=237271 Score = 131 bits (144), Expect = 3e-25 Identities = 414/623 (66%), Gaps = 19/623 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||| |||||||||||||||||||||| |||||| || ||||| | | || ||||| Sbjct 46855 CTTTTCGAAAAAGTTGGTCTTGCCCTGCATGGAGATCAGGTCCATCCAGTCAAAGGGGTT 46796 Query 159709 CTTCACGTGATAGC--GCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 || |||| ||| || | | | ||||||||| | | | ||| || || || Sbjct 46795 CTGCACGCCGTAGATGGCCTTGCAG--CCGAGAGCCTTGACGAGGCGGTCCGCGACGAAC 46738 Query 159767 TCGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTC 159825 | |||||| || | ||| | |||| || || | ||| ||||||||||| || Sbjct 46737 TTGATGTA-CTGCTGCATGAGGCTGGAGTTCATGCCAATGAGCTCGACGGGGAGCGCGTC 46679 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTA 159885 ||| | || || ||| |||||||| || | | |||| || | |||| || Sbjct 46678 CGAGATGAAGTCGCACTCGATCTCGACGGCGGACTTGATGATCT-CGTG-CACG--CGGG 46623 Query 159886 CCCCGGCTTGCCCAAA--ATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 || || || | | ||| | | || || ||||| ||||||||| ||||| Sbjct 46622 CCTCG-CTGGGCGGGTTGATGAGCTTGCGGAAGAGCAGGCAAGCAAAGTCGGTGTGCATG 46564 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 |||||||| || ||| | ||| ||||| | | |||| |||||||||| || ||| Sbjct 46563 CCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGCATGAGGCCGCGCTTC 46504 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAA 160062 |||||||| || ||||| ||||||| | | | | || ||||| ||||| ||||||||||| Sbjct 46503 TTGAGCCAGAAGATGGC-GCAAAAGGAGCCCGAGAAGAAGATGCCCTCGACGGCCGCAAA 46445 Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 | ||||| | ||| |||| | | | || || | | | | | ||||||| | Sbjct 46444 ACCGACGAGGCGCTCGGCAAAGGTGCAGATGTTGCCGTCCATGTAGCGCATGGCCCACTG 46385 Query 160123 AGCCTTCTTTGCG-ATGCACGGCATGCG-CTCGACGGCGTTAAACAATCTGTCCTGCTCC 160180 ||||| || ||| | ||| |||| ||| |||| |||||| || | | | ||| |||| Sbjct 46384 CGCCTT-TTGGCGCACGCAGGGCA-GCGTGTCGAGGGCGTTGAAGAGGCCGGCCTTCTCC 46327 Query 160181 TTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCG 160240 | || || || | || || |||||||| || | ||| | || ||| Sbjct 46326 CTGCTGTCGCGAATGTAGGTGTCGATAAGGAGCGAGTACACCTCGGAGTGGATGTTCTCG 46267 Query 160241 ATGGCCATCTGAAAGTTGTAGAA 160263 ||||||||||| ||| |||||| Sbjct 46266 ATGGCCATCTGGAAGCCGTAGAA 46244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795136841854320