Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1811 134 2e-26 seq1824 111 2e-19 >seq1811 Length=963003 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 706014 CTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 706073 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| || || | || | || |||||||||| |||||||| ||| | | Sbjct 706074 GATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 706133 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||||| | || || || | |||||||| ||||| || ||||| || || Sbjct 706134 CTCGATGGTGTCGCTGGGCTCAACGTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGAC 706193 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 706194 GAAGATCTGCAT 706205 >seq1824 Length=63427 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 54747 CTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 54806 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||| || || | || | || |||||||||| ||||| ||| | | Sbjct 54807 GATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTT 54866 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| | || ||||| | |||||||| || ||||| || || || || Sbjct 54867 CTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGAC 54926 Query 46582 AAAGATTTG 46590 ||||| || Sbjct 54927 GAAGATCTG 54935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565225350058440