Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1721 260 1e-64 seq1811 158 1e-33 seq1824 127 2e-24 >seq1721 Length=237271 Score = 260 bits (288), Expect = 1e-64 Identities = 559/823 (68%), Gaps = 22/823 (3%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 || || ||||| || || || |||| || ||| || || ||| | || |||||||| Sbjct 46854 TTTTCGAAAAAGTTGGTCTTGCCCTGCATGGAGATCAGGTCCATCCAGTCAAAGGGGTT- 46796 Query 132685 GCTGT--GTTGTAG-TG--CTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGA 132739 ||| | |||| || |||| ||||| | |||||| | ||| || |||| Sbjct 46795 -CTGCACGCCGTAGATGGCCTTGCAGCCGAGAGCCTTGACGAGGCG---GTCCGCGACGA 46740 Query 132740 ACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTT 132799 ||| |||||| ||| |||| | | || | || | || || || ||||| | Sbjct 46739 ACTTGATGTACTGCTGCATGAGGCTGGAGTTCATGCCAATGAGCTCGACGGGGAGCGCGT 46680 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 | | || ||| |||||| |||| ||| ||| ||| || ||||| ||| Sbjct 46679 CCGAGATGAAGTCGCACTCGATCTCGACGGCGGACTTGATGATCTCGTGCACGCGGGCCT 46620 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTG---AACATCAAGCAAGCAAAGTCGCAATGCAAGC 132916 |||| ||| | | | | ||||| || | || ||||||||||||| |||| || Sbjct 46619 CGCTGGGCGGGTTGATGA---GCTTGCGGAAGAGCAGGCAAGCAAAGTCGGTGTGCATGC 46563 Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| | | || | || ||| ||| || | || |||||||||||||| || | Sbjct 46562 CCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGCATGAGGCCGCGCTTCT 46503 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| || |||||| || |||||| ||||||| ||||||||||||||| ||| Sbjct 46502 TGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATGCCCTCGACGGCCGCAAAAC 46443 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || ||||||||| | || ||| |||| | | || |||||| ||||| | | Sbjct 46442 CGACGAGGCGCTCGGCAAAGGTGCAGATGTTGCCGTCCATGTAGCGCATGGCCCACTGCG 46383 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA-AACGGAGTT-TCTCTTC 133154 |||||| ||||| |||| ||| |||| |||||| || | ||| || || || | Sbjct 46382 CCTTTTGGCGCACGCAGGGCAGCGTGTCGAGGGCGTTGAAGAGGCCGGCCTTCTCCCTGC 46323 Query 133155 CGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCAT 133214 | | || | |||||||||||| ||| ||| |||| || ||||| | |||||| || Sbjct 46322 TGTCG--CGAATGTAGGTGTCGATAAGGAGCGAGTACACCTCGGAGTGGATGTTCTCGAT 46265 Query 133215 GGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA-C 133273 ||| || || |||||||| ||||| || |||||| || ||| || || ||| Sbjct 46264 GGCCATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGCAGGCTCACCTC-GCTGCAAAAGT 46206 Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||||| | || ||| ||||||||||| || ||||| |||||||| ||||||| Sbjct 46205 TCTCGACGACGTTCTCGAGCACGATGCCGTCCGAGGACGCGAAGAAGGCCAGGACGTGCT 46146 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 ||| || || ||||| | | ||| || |||| | ||||| | ||||| Sbjct 46145 TGACAAAGTGCTGCTCGCCCTTGGTCATTGAGTCAAAGTCCTTCTGGTCCTGGCCCAGGT 46086 Query 133394 CCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTA 133436 ||| ||||||| | ||||| ||||| |||||||| || ||||| Sbjct 46085 CCATCTCCTCGGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTA 46043 >seq1811 Length=963003 Score = 158 bits (174), Expect = 1e-33 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| ||||| ||||||||| ||||||| ||| ||| | Sbjct 706205 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGACGTTGAGCCCAGC 706146 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | || || Sbjct 706145 GACACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 706087 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| ||||| ||||| || |||| ||||| |||| ||||||||| Sbjct 706086 ACAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 706027 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || | ||||| || Sbjct 706026 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCG 705991 >seq1824 Length=63427 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 || || ||||| || || |||||||| || ||||||||| |||| |||||| || | ||| Sbjct 54935 CAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 54876 Query 38307 AGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365 | | | |||| | || || || | ||||| ||||| || ||| | || ||||| Sbjct 54875 ACGATCGAGAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAACA 54817 Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425 ||| || || | ||| ||||| ||||| || |||| ||||| |||| |||||||||||| Sbjct 54816 GCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACAT 54757 Query 38426 CCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 ||| ||||| | || || || | ||||| || | | |||||| || Sbjct 54756 CCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCGGC 54708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500161252260480