Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1679 165 1e-35 seq1721 127 3e-24 seq1817 95.1 2e-14 >seq1679 Length=19720504 Score = 165 bits (182), Expect = 1e-35 Identities = 414/619 (67%), Gaps = 9/619 (1%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||||| ||| | |||| ||||| | | || || ||| | Sbjct 15184882 CCCGCAGCACATGCTCATGCGCGTCTCCGTCGGCATCCACAAGCACGACATCGATCGCGC 15184941 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 | ||||| ||||||| |||||| | | || | |||| ||||| || || ||||||| Sbjct 15184942 CATCGAGACCTACGACATGATGTCGCAGAAGT-TCTTCACGCACGCCACGCCGACCCTCT 15185000 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAAC-AAGGAG 111788 ||||||| || || || | || |||||||| || || ||||| | ||| | ||||| Sbjct 15185001 TCAACGCCGGCACCCCCCGCCCGCAAATGTCGAGCTGCTTCCTCGT-GCACATGAAGGAC 15185059 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || || ||| | ||||| | | || ||| || || | ||||| |||| || Sbjct 15185060 GACTCGATCGAGGGCATCTTCCAGACGCTCGAGACCTGCGCGCGCATCTCCAAGTACGCC 15185119 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGA-GGTAC 111907 || || ||||| | ||||||| | || | ||| | | | | | || || Sbjct 15185120 GGCGGCATCGGCGTCAACATCCACAACATCCGCGCCT-CGGGCAGCTACGTCGCCGGCAC 15185178 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || || || | || ||| | || ||||||||||| || |||| ||| || ||||| Sbjct 15185179 CAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGCGTCTTCAACGACACCGCCCGCTA 15185238 Query 111968 TGTAAACCAAGCTG--GGC-GTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 || |||| | | ||| |||||||| || |||| | || || ||||| ||||| Sbjct 15185239 CGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATGTACCTCGAGCCTTGGCA 15185298 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 ||| || || ||| ||| ||||| | || ||||| || | ||||||| || Sbjct 15185299 CGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGC 15185358 Query 112085 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 |||||| ||||||| ||| |||||| | || || || || ||| || | || |||| | Sbjct 15185359 CCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTTTTTATGCAGCGTGTCGAGGCCAA 15185418 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 ||| ||| | ||||| || || || |||| || ||||| |||| | || || Sbjct 15185419 CAGCACCTGGACCCTCTTCTGCCCGAACGAGGCCAAGGGCCTCTCGGATGTCTACGGCGA 15185478 Query 112205 GGAGTTTGAAGCCCTCTAC 112223 ||||| | | |||||| Sbjct 15185479 CGAGTTCAAGGAGCTCTAC 15185497 Score = 102 bits (112), Expect = 1e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119 |||| || || ||||||||||||||||||||||| || || | ||| || ||| Sbjct 3168487 CCACAGCGTCGATCTCATCAATGAAGACGATGCAGGGCGAGTTCTTGCGGGCCTGGCCAA 3168428 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 ||||||| || || ||| || ||| || || || |||||||| | ||||| | ||| Sbjct 3168427 AGAGATCGCGCACGCGCGAGGGGCCAACGCCGACGAACATCTCAATAAAGTCGCTGCCGG 3168368 Query 16180 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 || || | || |||||| || | | || ||||| | || ||| || || ||||| Sbjct 3168367 AA-ATGGAGAAGAAGGGTACGCTGGCCTCGCCCGCGGTCGCCTTGGCCAGCAGGGTCTTG 3168309 Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || ||||| || || |||||||| || || || ||||||||||| Sbjct 3168308 CCGGTACCAGGAGGGCCGGCGAGGAGCGCGCCCTTGGGGATCTTGGCGCC 3168259 Score = 84.2 bits (92), Expect = 3e-11 Identities = 319/501 (64%), Gaps = 0/501 (0%) Strand=Plus/Plus Query 111561 ACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATGGAAACCCCACAGTAC 111620 || ||| ||||||||||||| | | | | || ||| | ||||| || || |||||| Sbjct 10824537 ACGCTCAAGAAAAGCTACCTTCTTCGGAAGCACGGCGTCATCATGGAGACGCCGCAGTAC 10824596 Query 111621 ATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACA 111680 || |||||| || ||| |||| | || || || || | || | | || || Sbjct 10824597 CTGCACATGCGCGTGGCGCTCGGCGTGCACGGCGAGGACCTGGAGGCGGCCTTCTCGATG 10824656 Query 111681 TACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGGT 111740 ||| |||| | | || || ||| || | || | || || || |||||| ||| Sbjct 10824657 TACAACAACACGAGCCAACGTCTGTACACGCCGGCGAGCCCCACTCTGTTCAACAGTGGC 10824716 Query 111741 ACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAAT 111800 || || | ||||| | | || ||||| |||| || || || || |||| | Sbjct 10824717 ACGCCCCGGCCCCAGCTAGCTTCGTGCTTCCTGGTTGCCCTGAAAGACGACTCCATCAGT 10824776 Query 111801 GGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGG 111860 ||||||| | |||| || || || || ||| |||| || || || || ||| Sbjct 10824777 GGCATTTTCCGCACGCTGGAGGAGTGCGCGGTGATCAGCAAGTACGCAGGCGGCATTGGG 10824836 Query 111861 ATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCA 111920 ||||||| || | || | || ||| || || || || || ||||| | || Sbjct 10824837 CTGCACATGCACCAGATCCGGTGCACCAACTCCTACATCAGCGGCACCAATGGGAAGTCG 10824896 Query 111921 GATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCT 111980 || || | || | || | || ||||||| ||| |||||| ||| ||||| || Sbjct 10824897 TCCGGCATCGTGCCTTTCCTGCAAGTCTTTAACGACACTGCGCGCGCTGTGAACCAGGCG 10824956 Query 111981 GGGCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAG 112040 || |||||||| | |||| | || || ||||| |||||||| ||| | || Sbjct 10824957 GGCAAGCGCAAGGGCGCCTTCGCCATTTACCTGGAGCCTCATCACGCGGACATCGAGCAG 10825016 Query 112041 TTCCTTGAGTTGCGTCTCAAC 112061 ||| | ||| |||| | |||| Sbjct 10825017 TTCATCGAGCTGCGCCGCAAC 10825037 >seq1721 Length=237271 Score = 127 bits (140), Expect = 3e-24 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| ||||| ||| ||| |||||| || ||||| ||||||||||| || |||| Sbjct 46422 CCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCT 46481 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 | ||||| || | |||||||||||||| || |||||||| |||||| ||||||||| | Sbjct 46482 TTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATG 46541 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || | ||| || |||||||| | ||| || ||||| Sbjct 46542 AGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGC 46581 >seq1817 Length=459392 Score = 95.1 bits (104), Expect = 2e-14 Identities = 302/456 (66%), Gaps = 17/456 (4%) Strand=Plus/Minus Query 176686 CAACTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTG 176745 || |||||| || |||||||||| ||| || | || | | || ||||| ||||| Sbjct 224150 CACCTTGAGCAGCGAGGGCCAGAAGTGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTG 224091 Query 176746 GGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAG---CTCGGA 176802 || || |||| || ||| |||||||||||||| | || || || || || || Sbjct 224090 CGAGCCATCGTGGTCCTGATCAGTCATGATCATGAGGTGGCCGTAGCGCAGACCCTTGGT 224031 Query 176803 AACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTC 176862 | | | ||| ||| ||| | || || |||| ||||||| ||| || | || || Sbjct 224030 GTCGGC--GTAAGT-CTTGCCCGGCTGGAGGCCCATGATCTTCATGATATTCTGGATTTC 223974 Query 176863 TTGGTTTGATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAG 176922 | ||| ||| ||| | ||||| || || || || ||| ||||| | Sbjct 223973 CTCGTTCTTCATGATCTGGCCGTGCGAGGCCTCGCGGACGTTGAGCAGCTTGCCACGCAA 223914 Query 176923 AGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGC-AACCGCGAGCGTTT 176981 || ||||| ||||||| ||||| || || || ||| ||||| | |||||||| | Sbjct 223913 GGGAAAGACGCCGTAGTTGTCGCGGCCGACGACGCTGAG-CCCGCTGATGGCGAGCGTCT 223855 Query 176982 TCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTGCCAGA-TTG-TGCCGTACCCGC 177039 | || || |||||||| || | |||||| || || ||| | || ||| |||| || || Sbjct 223854 TTGCGGAGTCACCCTCGGTGAGGATGAGAGTGCATTTGTCGGAGTTGCGGCCG--CCGGC 223797 Query 177040 CTTGTTCGCATCATCCA-ATTTGGGAATACCAGTAATTTTGGACTTTCGCGTACCGTCAG 177098 ||||| || || || | ||| || || | || ||||||||| ||| ||| | | Sbjct 223796 GTTGTTGGCGTCGTCGAGCTTTTCGACGTCC-TTGATCTTGGACTTTTTCGTGCCGCCGG 223738 Query 177099 ATTT---TGAGAGTTCCTTCATCTCCTTAAACTTTG 177131 || ||||| || |||||||||| ||||| Sbjct 223737 CCTTGCGCGAGAGCTCGCGCATCTCCTTAGCCTTTG 223702 Score = 82.4 bits (90), Expect = 9e-11 Identities = 168/250 (67%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 176017 CGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGAT 176076 ||| ||||| || || | | |||| ||| ||||| || | || || || ||||| Sbjct 224831 CGCGTCCTTGCCGCCGAGAATGCGCGAACCGAACTGGCCGCTGGGGAAGAGCAGGTTGAT 224772 Query 176077 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTC 176136 ||||| || |||| || | ||||| |||| ||||| || || ||||| || Sbjct 224771 GTTGTTCGAGCCCACAAAGGTCTGCGCCATGCTGACGATCGTCGACGACAGCGAGACCTC 224712 Query 176137 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 176196 ||||||||||||||| | ||| | ||| | | | | |||||| || || || || Sbjct 224711 ACCGTGGTGGTACGCCGAGTGCTCCGAGACGTAGCCAACGAGCTGCGCGACCTTGATGTC 224652 Query 176197 ATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 176256 |||||| || | ||| || || | | |||||||| ||||| |||||||| || Sbjct 224651 CGACTTGAGCTTGCGCTTGAAGCAGGCAAAGAGCACCTTGCGCTGCGAGGGCTTGAGGCC 224592 Query 176257 ATCCGCCATG 176266 || ||||| Sbjct 224591 GTCGACCATG 224582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620728068609840