Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1679 109 6e-19 >seq1679 Length=19720504 Score = 109 bits (120), Expect = 6e-19 Identities = 278/413 (67%), Gaps = 15/413 (4%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || || ||||| || | || || ||||| ||||| ||||| || | Sbjct 3168665 CGGTCAAAGCGGCCGGGGCGCAGAATGGCGGGGTCGAGAATGTCGACGCGGTTGGTGCCA 3168606 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCCATTTCTGTGAGAAGCTGG 11619 |||| || || | ||| ||| ||| | || ||||||||||| ||| |||||| Sbjct 3168605 GCAAGAACCACGACGCC---CTCCTTGGAGGTGAAGCCGTCCATTTCAACGAGCAGCTGG 3168549 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGG-GCATA--CCACC--TGCCGAACGCTTCT 11674 || | || | || ||||| |||||| | || | || || | ||| ||| | Sbjct 3168548 TTCAGGGTGTTCTCGCGCTCGTCGTTGCCGCCGCTGAAGCCGCCCTTACCGCGCGCG-CG 3168490 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 || |||||||| |||||||| ||||| ||||| || || ||| || ||||| Sbjct 3168489 CGCC-ACAGCGTCGATCTCATCAATGAAGACGATGCAGGGCGAGTTCTTGCGGGCCTGGC 3168431 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 | || || || || || ||| | ||||| || ||||||||||||| ||| | || | Sbjct 3168430 CAAAGAGATCGCGCACGCGCGAGGGGCCAACGCCGACGAACATCTCAATAAAG-TCGCTG 3168372 Query 11795 CAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | | | | || | |||||| || | | ||| || ||| | || || || || ||| Sbjct 3168371 CCGGAAATGGAGAAGAAGGGTACGCTGGCCTCGCCCGCGGTCGCCTTGGCCAGCAGGGTC 3168312 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 || || |||||||| | || ||||| || ||||| |||||||||||| || Sbjct 3168311 TTGCCGGTACCAGGAGGGCCGGCGAGGAGCGCGCCCTTGGGGATCTTGGCGCC 3168259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588962402016600