Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1679 152 6e-32 seq1817 114 2e-20 seq1721 91.5 2e-13 >seq1679 Length=19720504 Score = 152 bits (168), Expect = 6e-32 Identities = 626/974 (64%), Gaps = 21/974 (2%) Strand=Plus/Minus Query 106342 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 106401 ||| ||||| || || || | ||| ||||| ||||| || || ||||| || | ||| || Sbjct 15185854 CTCGACGGGGTAGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGT 15185795 Query 106402 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA---TTGACATACTTTGG 106458 || || | || | | || | |||| ||| ||| ||||| |||| | Sbjct 15185794 GACATCGTAGAGGGCCTGGAAGTCGTAGGTGCC---CTCCTCAATGTTGACGAACTTGCG 15185738 Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 106518 ||| ||| || || | ||||| || || ||| || | | |||||| | || Sbjct 15185737 CAGGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGAT 15185678 Query 106519 TTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT 106578 || || |||| ||| || ||| || | || | ||||| ||||| ||| ||| Sbjct 15185677 CTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTT 15185618 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638 ||| || |||||| |||||||| | ||| || ||||| |||| | | || || Sbjct 15185617 GCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTG 15185558 Query 106639 CTTCCACACATCGGCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTACTT 106695 | ||| | || ||| | | ||| ||| ||| || |||||| |||||| Sbjct 15185557 GTACCAGAGGTCCTGGGCGCGCA---TGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCG 15185501 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 106755 |||||| | | ||||| || || | || ||||| || |||| || || Sbjct 15185500 CTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTGGCCTCGTTCGG 15185441 Query 106756 ACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 106815 ||||| || | ||| | |||| || |||| ||| |||||||| || | ||| Sbjct 15185440 GCAGAAGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCA 15185381 Query 106816 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 106875 |||| | ||||| || | || |||| || | || ||||| || | ||| Sbjct 15185380 GAGGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTC 15185321 Query 106876 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 106935 || ||| ||| || || |||||||| ||||| || || | |||| || ||||| || Sbjct 15185320 AATGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCG 15185261 Query 106936 AC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992 ||| | | || | || ||||| || ||| |||| || ||||||||||| || | Sbjct 15185260 CTTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCAC 15185201 Query 106993 AATACCATCTGATTGACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCTCACATCA 107050 ||| || | || || || || || || ||| || | | ||| | | | Sbjct 15185200 AATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGA--GGCGCGGATGTTG 15185143 Query 107051 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 107110 ||||||| | || || || || || |||| ||||| |||| || | || || Sbjct 15185142 TGGATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGTC 15185083 Query 107111 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 107170 |||| || | ||| ||||| ||||| || | |||||||| || ||||| ||| Sbjct 15185082 TGGAAGATGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATTTGC 15185023 Query 107171 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGA 107229 || | || || || || ||||||||||| || || ||||| |||| | || | || || Sbjct 15185022 GGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGA-ACTTCTGCGA 15184964 Query 107230 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCAC 107289 |||| ||||||| ||||| | | | ||| ||||| | | ||||||||||| || || Sbjct 15184963 CATCATGTCGTAGGTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGAC 15184904 Query 107290 ACGCATAAACATGT 107303 ||||| | ||||| Sbjct 15184903 GCGCATGAGCATGT 15184890 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426 |||| || || ||||||||||||||||| || || || || | |||||| ||| Sbjct 3168487 CCACAGCGTCGATCTCATCAATGAAGACGATGCAGGGCGAGTTCTTGCGGGCCTGGCCAA 3168428 Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9486 |||||||||| || | || ||| || || || |||||||| | ||||| | ||| Sbjct 3168427 AGAGATCGCGCACGCGCGAGGGGCCAACGCCGACGAACATCTCAATAAAGTCGCTGCCGG 3168368 Query 9487 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9545 || || | || |||||| || | | || ||||| | || ||| || || ||||| Sbjct 3168367 AA-ATGGAGAAGAAGGGTACGCTGGCCTCGCCCGCGGTCGCCTTGGCCAGCAGGGTCTTG 3168309 Query 9546 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 || ||||| || || |||||||| || ||| || ||||||||||| Sbjct 3168308 CCGGTACCAGGAGGGCCGGCGAGGAGCGCGCCCTTGGGGATCTTGGCGCC 3168259 >seq1817 Length=459392 Score = 114 bits (126), Expect = 2e-20 Identities = 262/384 (68%), Gaps = 18/384 (5%) Strand=Plus/Minus Query 169136 CAACTTGAGAAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTG 169195 || |||||| || ||||||||||| |||||| | || | || || ||||| ||||| Sbjct 224150 CACCTTGAGCAGCGAGGGCCAGAAGTGGTGGATAAAGTTCATGAGCAGGCCCTTAATGTG 224091 Query 169196 AGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAAC 169255 || ||||| | || ||| ||||| ||||| || | || ||||| || | Sbjct 224090 CGAGCCATCGTGGTCCTGATCAGTCATGATCATGAGGTGGCCGTAGCGCAGACCCTTGGT 224031 Query 169256 ATCTTGGTA-GTCTTTTCCTTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTT 169314 || ||| ||||| || | || || |||| ||||||| ||| || | || || | Sbjct 224030 GTCGGCGTAAGTCTTGCCCG-GCTGGAGGCCCATGATCTTCATGATATTCTGGATTTCCT 223972 Query 169315 GGTT-----TGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACG 169369 ||| |||| || || |||| || || |||||||| || ||| ||||| Sbjct 223971 CGTTCTTCATGATCTG-GCCGTGC----GAGGCCTCGCGGACGTTGAGCAGCTTGCCACG 223917 Query 169370 GAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGC-GACCGCAAGGG 169428 | ||||||||||| |||| || || || |||||| ||| ||||| || || || | Sbjct 223916 CAAGGGAAAGACGCCGTAGTTGTCGCGGCCGACGACGCTGAG-CCCGCTGATGGCGAGCG 223858 Query 169429 TTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGA-TTGC-GCCGTACC 169486 | || || || |||||||| |||| ||||| || || || | || |||| |||| || Sbjct 223857 TCTTTGCGGAGTCACCCTCGGTGAGGATGAGAGTGCATTTGTCGGAGTTGCGGCCG--CC 223800 Query 169487 CGCCTTGTTTGCGTCGTCCAACTT 169510 || ||||| |||||||| | ||| Sbjct 223799 GGCGTTGTTGGCGTCGTCGAGCTT 223776 >seq1721 Length=237271 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||||| || ||| || | ||||| |||||| || || Sbjct 46581 GCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCC 46522 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||| | ||| | || ||||| || || || ||||||||||| Sbjct 46521 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATG 46462 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 ||||| || |||||| | | ||||||||||| |||| || Sbjct 46461 CCCTCGACGGCCGCAAAACCGACGAGGCGCTCGGCAAAGGTGC 46419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589967178818280