Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1679 457 2e-123 seq1721 170 4e-37 >seq1679 Length=19720504 Score = 457 bits (506), Expect = 2e-123 Identities = 1175/1757 (67%), Gaps = 87/1757 (5%) Strand=Plus/Minus Query 212690 ATGTAG--GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCT 212747 |||||| ||| || ||||| |||||| ||||| | | | | || ||||| | || Sbjct 15186528 ATGTAGATGTTGAGCGACTGCGACTGGTCGATGAAGGCGCCGCGATCGGCGGCGAGATCG 15186469 Query 212748 ATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGG 212807 |||| | ||| || |||||| ||||||||| ||| | |||||||| || ||| Sbjct 15186468 ATGAGGCAGCGCTGCTTGATCTCCCAGACGGTCTTGTAGAGCGCCTTGAGGTCGTCGGGG 15186409 Query 212808 AAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCG 212867 | | || | ||||||||| || || | || | | ||| ||| ||| || | Sbjct 15186408 ATGGCGCCAACGTTCTGCACCGAGCCGCGGTCGGCCATGATCTGGTTGCGGATGGCCGGG 15186349 Query 212868 TTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCA 212927 ||||||| || | | ||| ||||| |||||| | |||||| | | ||| || Sbjct 15186348 GTCCAGAGACCGCGCGAGATGAGGTCCTTGAGCAGGTGTGTGTTGACGACCGTGAACTCG 15186289 Query 212928 CCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTC 212987 || | ||| || | | | ||| | ||| ||| ||||||| | | |||| ||| Sbjct 15186288 CCAGCGAGGACGCGGCGCGAGTACATGTTGCTGGTGAAGGGCTCAAAGGCCTCGCAGTTG 15186229 Query 212988 CCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACT 213047 || |||||||| | || ||| ||||||||||| || ||||| || ||| | ||| Sbjct 15186228 CCGAGAATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCGACCAGCAGCGAGTTACGCACA 15186169 Query 213048 CCGTGCTCGCCGATGAGGCGCCGAAGC----TCTGCCCAGTCCCATCTGCCAGACAGGTC 213103 ||||||| || |||| |||| || || ||| |||||||||| ||| || || Sbjct 15186168 CCGTGCT-GC--ATGACGCGCTGACGCAGCGTCT-CCCAGTCCCA---GCC---GAGCTC 15186119 Query 213104 C---TCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCC 213160 | | | |||| ||||||| | ||| ||||| || |||| | ||||| |||| || Sbjct 15186118 CGGGTTGGGCTTCTCGTTCCAGAGGTCGAACTGGAACTTGCCCTCGCTCA-TGGGCGACC 15186060 Query 213161 CTGGTAAGAGG---AGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC-CTGCAGGG 213216 | | || ||| ||| ||||| | ||||| ||||||||||| || || |||| || Sbjct 15186059 C--GGAAAAGGTCTGGTACGGGCCCTCCTCCTGCGCCAGCTCGCACGAGGCGGTGCA-GG 15186003 Query 213217 CAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGG------G 213270 | | |||||||||| || || || || | ||||||||| |||||| ||| Sbjct 15186002 CGCCAAAGTAGATGGTCTCGAAGATGTCGCGGTTGAGCTTGCGGGCCTCCGGGCTCTCAA 15185943 Query 213271 ACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGA 213330 | | |||| ||| | ||| || | ||| || || ||||| || || ||||||| Sbjct 15185942 AGGGGAAGCGCAGCTCCAT------GAGCGCATTGGCGAGGCCCTGAACGCCAATGCCGA 15185889 Query 213331 TGGGTCTGTGTCTCAGGTTAGACTTGG--AGCACTCCTCCAAGGGGTAAAAGTTGCAGTC 213388 |||| | ||| | | ||| || | | |||||| | |||||| ||||||| ||| Sbjct 15185888 TGGGGCGGTGGCGCGTGTT--GCTGCGCTCGGCCTCCTCGACGGGGTAGAAGTTGCCGTC 15185831 Query 213389 GATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACAT------GGGCCAGGTACTC 213442 ||||| ||||||||| |||| | || |||||||||| ||||| || | || Sbjct 15185830 GATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGTGACATCGTAGAGGGCCTGGAAGTC 15185771 Query 213443 GTGATTGAACACGTAGCCCCCGTC---CTGCACAAACTCAGGCAGGGCGATGCTGGCCAG 213499 || | || |||| | || | || |||| ||||| |||| ||| || Sbjct 15185770 GT--------AGGT-GCCCTCCTCAATGTTGACGAACTTGCGCAGGTTGATGGAGGCGAG 15185720 Query 213500 GTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCT 213559 |||||| ||||| ||||| | || | | | |||||| |||||||||||||||||||| Sbjct 15185719 GTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGA 15185660 Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGA 213618 | | |||| |||| ||||||| ||||| ||| ||||| | ||| | |||||| ||| Sbjct 15185659 GGACTTGATGATGCCGAGGTTCTTCTGGTTCGAC-TTGCGGTTGCAGGCGTCCTTGAAGA 15185601 Query 213619 GCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGG 213678 ||||| | || |||||||| | |||| | ||| |||||| |||||||| ||||| Sbjct 15185600 GCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTGGTACCAGAGGT-CCTGG 15185542 Query 213679 CCTTGACCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTACTGTTCGTAGAGCTCGTTG 213737 | | || | || | || ||| | | |||||| | ||||||||||| ||| Sbjct 15185541 GC--GCGCA-TGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTCGTAGAGCTCCTTG 15185485 Query 213738 AATTCGTGGCCCCAGACCCTGTCC---AGTCCC--GGACAGGATGCGGGACACATGAGGC 213792 || |||| ||| |||| ||| || ||| || | | | |||| || | |||| Sbjct 15185484 AACTCGTCGCCGTAGAC---ATCCGAGAGGCCCTTGGCCTCG-TTCGGG-CAGAAGAGGG 15185430 Query 213793 TCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGA 213852 ||||| | || | ||| | |||||| || ||||| |||||||| || ||| || Sbjct 15185429 TCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCAGAGGGCGTAGA 15185370 Query 213853 ACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAA 213912 | ||||| | || | ||| ||| || ||| ||||| || || | ||||| Sbjct 15185369 AGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTCAATGAAGTCCT 15185310 Query 213913 AGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGC 213969 || ||| |||||||| ||||| | ||| ||||| |||| |||| | ||| ||||| Sbjct 15185309 CGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCTTGCCGCCGC 15185250 Query 213970 CCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGG 214029 |||||||||| | ||| |||||||| ||| || | || || | ||||| | Sbjct 15185249 CCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAATGCCGTTCG 15185190 Query 214030 ACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCC 214089 |||| |||||||| || || | || ||| ||||| | | |||| ||| || | Sbjct 15185189 ACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGGCGCGGATGTTGTGGATGTTGACGC 15185130 Query 214090 CTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTC-ACAGTCTCCATGATGCCG 214148 | ||||| ||||||||||||||||| |||||| | ||| | |||| | |||||| Sbjct 15185129 CGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAG-GTCTCGAGCGTCTGGAAGATGCCC 15185071 Query 214149 GCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAG 214208 | || ||| || | | || || | |||||||||||| | || || | || | | Sbjct 15185070 TCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATTTGCGGGCGGGGGGTG 15185011 Query 214209 CCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAG 214268 || | |||||| || || || |||| || | | ||||| | || | | |||| Sbjct 15185010 CCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTGCGACATCATGTCGTAG 15184951 Query 214269 GTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATG 214328 ||||| | | | |||||||||||||||||| | | | | ||| |||||| Sbjct 15184950 GTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGACGCGCATGAGCATG 15184891 Query 214329 TGCTGGGGCCTCTCTATGGGTCCTTTGGGGC--CCTTGAGCAGGTAGGAGCGCTCCAGAG 214386 ||||| || | ||| | | ||| | | ||||||||||||| |||||||| || | Sbjct 15184890 TGCTGCGGGCGCTC--GGCGATCTTGCCGTCAACCTTGAGCAGGTACGAGCGCTCGAGCG 15184833 Query 214387 TCTTGAACCCAAAGTAG 214403 ||||||| || ||| || Sbjct 15184832 TCTTGAAGCCGAAGAAG 15184816 Score = 118 bits (130), Expect = 2e-21 Identities = 469/718 (65%), Gaps = 29/718 (4%) Strand=Plus/Minus Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||| | ||||||| |||| |||||| | | |||||||||||||||||| ||||| Sbjct 10825391 GTACTCGACGATCTCGTTGCAGAGGTTGGAGGACCGGATGGTGCCCAGGTTCATCTGGTT 10825332 Query 213590 TGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC-TAGCTGGG 213648 ||| |||| | | ||||||| | | ||| ||| ||| |||| | | ||| Sbjct 10825331 GTTCTTCTTGTTGACGGCGTCCTTGTTGGTAAGGTACGGGCCGCCGCTCTCCTTGATGG- 10825273 Query 213649 ACACCAGTATCTGGCTCCAGAGGTACCTGG--CCTTGACCACCCGCCTGACAGCTCCGGG 213706 || | || |||||||| ||||| |||| ||| |||||| |||| | Sbjct 10825272 ACTTGACCATGGACGTCCAGAGGG-CCTGGGCCCTT----ACCGTCCTGAC---TCCGCG 10825221 Query 213707 ---CGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAG 213763 | |||||||| | ||||| || | ||| | |||| || ||||| |||| Sbjct 10825220 ACCCTCGGCCTCGTAGCGCTCGTACAGAGCCTTGTACTCGTCTCCGTAGACCTCCTCCAA 10825161 Query 213764 TCCCGGACAGGAT-GCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGA--CTCTCTG 213820 || || || ||||| | | ||| |||| | | ||| ||| || | | || Sbjct 10825160 GCCGGGCGCGGTCCGCGGGTCGAA-GAGCGTCCACTGCTCGT--TCTTCGAAACGCGCTC 10825104 Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| ||| | || ||| |||| |||| || |||| || | ||| ||| Sbjct 10825103 CATGAAGGTGTCGGAGAGCCAGCACGCGATGAATAGATCCCGCGTGCGGAGCTCCTCCGG 10825044 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || | ||| |||||| || | || | |||||||||||| ||||||| ||| Sbjct 10825043 CCCCGTGTTGCGGCGCAGCTCGATGAACTGCTCGATGTCCGCGTGATGAGGCTCCAGGTA 10824984 Query 213941 GATGGCAAAGGCGCCCGGCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCAT-GTTGA 213999 ||||| ||||||||| | |||||| |||||| || |||| | || | ||| | Sbjct 10824983 AATGGCGAAGGCGCCCTTGCGCTTGCCCGCCTGGTTCA-CAGCGCGCGCAGTGTCGTTAA 10824925 Query 214000 AGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCT-ATATACGAG 214058 ||| |||||| || || | ||| |||| || |||| | ||||| || || ||| Sbjct 10824924 AGACTTGCAGGAAAGGCACGATGCCGGACGACTTCCCATTGG-TGCCGCTGATGTAGGAG 10824866 Query 214059 CCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATG 214118 || | || | | | |||| ||||| ||||| || ||||||||| ||||| Sbjct 10824865 TTGGTGCACCGGATCTGGTGCATGTGCAGCCCAATGCCGCCTGCGTACTTGCTGATCACC 10824806 Query 214119 GCGCAGCGCCTCACAGTCTCC--ATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCA 214176 ||||| | |||| ||| | | | ||||| ||| ||| ||| | ||| | || Sbjct 10824805 GCGCA-CTCCTC-CAGCGTGCGGAAAATGCCACTGATGGAGTCGTCTTTCAGGGCAACCA 10824748 Query 214177 AGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGC 214234 |||||| | |||||||||| || || |||| |||||| || |||||||| || Sbjct 10824747 GGAAGCACGAAGCTAGCTGGGGCCGGGGCGTGCCACTGTTGAACAGAGTGGGGCTCGC 10824690 >seq1721 Length=237271 Score = 170 bits (188), Expect = 4e-37 Identities = 485/736 (66%), Gaps = 11/736 (1%) Strand=Plus/Minus Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | ||||||||| ||| |||||| | ||||||| || ||||||||| ||||| Sbjct 46755 AGGCGGTCCGCGACGAACTTGATGTACTGCTGCATGAGGCTGGAGTTCATGCCAATGAGC 46696 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||||| | || | | || || || ||| |||| ||||| | | ||| Sbjct 46695 TCGACGGGGAGCGCGTCCGAGATGAAGTCGCACTCGATCTCGACGGCGGACTTGATGATC 46636 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | | ||||||| ||| ||| |||| | | ||||| |||||| ||| ||| Sbjct 46635 TCGTGCACGCGGGCCTCGCTGGGCGGGTTG---ATGAGCTTGCGGAAGAGCAGGCAAGCA 46579 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| |||||| ||| ||||| |||||||| | | | ||||||||| |||||| ||| Sbjct 46578 AAGTCGGTGTGCATGCCCTCGTCGCGGCTGATCATCTCATTGGAGAAGGTGAGACCCGGC 46519 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAG-AGCCAGAGAAGAAGATGCC 48255 |||| || | || ||||||||||| || || || |||| |||| |||||||||||||| Sbjct 46518 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAAAAGGAGCCCGAGAAGAAGATGCC 46460 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC-GTTCTTGTCTGAGATCC 48314 ||| || ||||| || || ||| | ||| | |||| || | | ||| | || Sbjct 46459 CTCGACGGCCGCAAAACCGACGAGGCGCTCGGC-AAAGGTGCAGATGTTGCCGTCCATGT 46401 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 || | ||||| | ||||| | | ||| |||| ||| || | ||| ||||| Sbjct 46400 AGCGCATGGCCCACTGCGCCTTTTGGCGCACGCAGGGCAGCGTGTCGAGGGCGTTGAAGA 46341 Query 48375 GCTTCTTGCACTC-ACCTGC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | | || || ||||| ||| || ||||| || || | ||||| ||| Sbjct 46340 G--GCCGGCCTTCTCCCTGCTGTCGCGAATGTAGGTGTCGATAAGGAGCGAGTACACCTC 46283 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || || |||||||| ||||||||| | ||||| || Sbjct 46282 GGAGTGGATGTTCTCGATGGCCATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGCAGGCT 46223 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 ||| || || | || |||| | | ||||| || || || || || | || || Sbjct 46222 CACCTCGCTGCAAAAGTTCTCGACGACGTTCTCGAGCACGATGCCGTCCGAGGACGCGAA 46163 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 |||||| ||||| || || | || || ||||| | ||| | | | || ||| Sbjct 46162 GAAGGCCAGGACGTGCTTGACAAAGTGCTGCTCGCCCTTGGTCATTGAGTCAAAGTCCTT 46103 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672 ||| | ||||||||||| || || | |||||||| || || || || ||||| Sbjct 46102 CTGGTCCTGGCCCAGGTCCATCTCCTCGGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTA 46043 Query 48673 CATGCCCCATATGTCC 48688 | |||| |||||| Sbjct 46042 TGCGTCCCAGATGTCC 46027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931511293236480