Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1721 190 4e-43 >seq1721 Length=237271 Score = 190 bits (210), Expect = 4e-43 Identities = 398/583 (68%), Gaps = 24/583 (4%) Strand=Plus/Plus Query 25468 CACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAG 25527 ||| | || || ||||| ||||||||||| | ||| |||||| ||||| ||| Sbjct 46022 CACCAGGACATCTGGGACGCATACAAGAAGGCCGAGGCCTCGTTCTGGACGGCCGAGGAG 46081 Query 25528 ATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTT 25587 || || |||| | ||||| | | | || || | | |||| | ||||||||| ||| Sbjct 46082 ATGGACCTGGGCCAGGACCAGAAGGACTTTGACTCAATGACCAAGGGCGAGCAGCACTTT 46141 Query 25588 CTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 ||||| |||| |||| ||||| || |||| || || || ||| |||||| | | Sbjct 46142 GTCAAGCACGTCCTGGCCTTCTTCGCGTCCTCGGACGGCATCGTGCTCGAGAACGTCGTC 46201 Query 25648 GAGAGATTCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAG 25704 |||| || ||| || ||| || | || ||||| || |||||||| |||||| Sbjct 46202 GAGAACTTTTGCAGCGAGGTG-AG--CCTGCCCGAGGCTCGCTGCTTCTACGGCTTCCAG 46258 Query 25705 ATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATT 25761 ||||||||||| || | ||||| |||||||| | ||| || || || |||||| Sbjct 46259 ATGGCCATCGAGAACATCCACTCCGAGGTGTACTC---GCTCCTTATCGACACCTACATT 46315 Query 25762 ACAGACGTCGCCGAGAGAGATCGGC-TGTTTGGTGCCATCGAGCACA-TACCCAGCAT-- 25817 ||| | |||| || |||| | || ||| |||| ||| | ||| || | Sbjct 46316 CGCGACAGCAGGGAGA-AGGCCGGCCTCTTCAACGCCCTCGA-CACGCTGCCCTGCGTGC 46373 Query 25818 --CAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC 25875 ||| ||||||| |||||||||| | || || || | | | || |||| | Sbjct 46374 GCCAA----AAGGCGCAGTGGGCCATGCGCTACATGGACGGCAACATCTGCACCTTTGCC 46429 Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCC 25935 ||||| || || | ||||| || || ||||||||||| ||| || || ||| ||| Sbjct 46430 GAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCC 46489 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATC 25995 ||||||||||||||| || || |||||| || || ||| ||||| ||| | ||| Sbjct 46490 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAATGAGATGATC 46549 Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 ||| | |||||||| | |||| || ||||| |||||||||| Sbjct 46550 AGCCGCGACGAGGGCATGCACACCGACTTTGCTTGCCTGCTCT 46592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928823355295680