Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015-
12-09] 1,847 sequences; 43,429,441 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq1824 143 4e-29
seq1811 125 9e-24
seq1679 111 2e-19
>seq1824
Length=63427
Score = 143 bits (158), Expect = 4e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 171865 CAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGAC 171924
|| ||||| || || ||||| || || || || ||||||||||| || ||| | || |||
Sbjct 54935 CAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 54876
Query 171925 ACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAA 171984
|| ||||| ||| | || |||||||||| || ||||| ||||| || || ||||| ||
Sbjct 54875 ACGATCGAGAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAACAG 54816
Query 171985 CGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTT 172044
|| ||||| || || || || ||||| || || || || || ||| || |||||| |
Sbjct 54815 CGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATC 54756
Query 172045 CAAAAGGAGTCTACTCTACACCTTGTTCT 172073
|| |||||||| || || ||||| || ||
Sbjct 54755 CAGAAGGAGTCCACCCTCCACCTCGTGCT 54727
>seq1811
Length=963003
Score = 125 bits (138), Expect = 9e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || || || || || || || ||||||||||| |||||| |
Sbjct 706205 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGACGTTGAGCCCAGC 706146
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| ||| | || ||||| || || ||||| ||||| || || |||||
Sbjct 706145 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 706086
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || || || || || ||||| || || || || || ||| || ||||||
Sbjct 706085 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 706026
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088
| || |||||||| || || ||||| || || | || || |||||
Sbjct 706025 ATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGCGGTGG 705979
>seq1679
Length=19720504
Score = 111 bits (122), Expect = 2e-19
Identities = 337/520 (65%), Gaps = 3/520 (1%)
Strand=Plus/Plus
Query 78242 GGAACTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTATTCAATGCTACAGCA 78301
|| || || || ||||| | || ||| | ||||||||| | || ||||| | || ||
Sbjct 15185174 GGCACCAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGCGTCTTCAACGACACCGCC 15185233
Query 78302 CGCTATGTCAACCAAGCGGGTCGTAGG---AAGGGGTCATTCGCTATGTACCTTGAACCT 78358
||||| || |||| | || | | | ||||| || ||||| |||||||| || |||
Sbjct 15185234 CGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATGTACCTCGAGCCT 15185293
Query 78359 TGGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTCAACCAGGGTGACGAGGAAGCT 78418
||||||||||| || ||| || | || || || ||||| || | ||||| |
Sbjct 15185294 TGGCACGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAACCACGGCAAGGAGGAGGTC 15185353
Query 78419 CGATGCAGGGATTTATTCACTGCTATGTGGATTCCGGATCTTTTTATGAAGAGAGTTGAG 78478
|| | | || | ||| || | ||| | || || ||||||||| || | || |||
Sbjct 15185354 CGCGCCCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTTTTTATGCAGCGTGTCGAG 15185413
Query 78479 GAAGGAGGTAAATGGTCTCTTTTCTGTCCAGATAAGACTAAGGGTCTTTCAGATGTATAC 78538
| | | ||| | || ||||| || | || | ||||| || || ||||| |||
Sbjct 15185414 GCCAACAGCACCTGGACCCTCTTCTGCCCGAACGAGGCCAAGGGCCTCTCGGATGTCTAC 15185473
Query 78539 GGGGAAGAATTCGAAAAATTGTACACTAAATACGAAGAGGAAGGTCTCGCTATTAAGACA 78598
|| || || ||| | | | ||| ||||| |||| || | || |||||
Sbjct 15185474 GGCGACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAGGGCCGCGGCCGCAAGACC 15185533
Query 78599 ATTGATGCATCTGAACTATGGAAAGCTATTATCAAAAGTCAAACAGAGACCGGCACCCCG 78658
|| || || || ||| | || | | | || | ||||||||| |||
Sbjct 15185534 ATGCGCGCCCAGGACCTCTGGTACCAGATCCTGAGCTGCCAGATCGAGACCGGCGTGCCG 15185593
Query 78659 TATATGCTATACAAAGACAGCTGTAACAGAAAGTCTAACCAAAAGAACCTAGGTGTCATC 78718
| ||||| | ||| ||| ||| ||| | ||||| ||||| |||||||| || |||||
Sbjct 15185594 TTCATGCTCTTCAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACCTCGGCATCATC 15185653
Query 78719 AAAAGCTCTAACCTTTGCACAGAAATTCTGGAATACACGG 78758
|| ||| ||||| ||||| || || | || ||| |||
Sbjct 15185654 AAGTCCTCGAACCTGTGCACCGAGATCATCGAGTACTCGG 15185693
Score = 100 bits (110), Expect = 4e-16
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 198558 GGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCG 198617
|| || || |||||||| | || ||||| || || ||||| || || || | ||||
Sbjct 3168277 GGCGCGCTCCTCGCCGGCCCTCCTGGTACCGGCAAGACCCTGCTGGCCAAGGCGACCGCG 3168336
Query 198618 GGTGAATCGAGTGTCCCCTT--TCTTCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCG 198675
|| || | || || ||||| ||| || | | | || |||| ||| || ||||||||||
Sbjct 3168337 GGCGAGGCCAGCGTACCCTTCTTCTCCATTTC-CGGCAGCGACTTT-ATTGAGATGTTCG 3168394
Query 198676 TTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCAT 198735
| || ||||| | |||||| || || ||||||| || || || | || || |
Sbjct 3168395 TCGGCGTTGGCCCCTCGCGCGTGCGCGATCTCTTTGGCCAGGCCCGCAAGAACTCGCCCT 3168454
Query 198736 GTATCATCTTCATTGATGAGATTGACGCTGT 198766
| ||| |||||||||||||||| ||||||||
Sbjct 3168455 GCATCGTCTTCATTGATGAGATCGACGCTGT 3168485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657847211601840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |