Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1824 143 4e-29 seq1811 125 9e-24 seq1679 111 2e-19 >seq1824 Length=63427 Score = 143 bits (158), Expect = 4e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171865 CAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGAC 171924 || ||||| || || ||||| || || || || ||||||||||| || ||| | || ||| Sbjct 54935 CAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 54876 Query 171925 ACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAA 171984 || ||||| ||| | || |||||||||| || ||||| ||||| || || ||||| || Sbjct 54875 ACGATCGAGAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAACAG 54816 Query 171985 CGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTT 172044 || ||||| || || || || ||||| || || || || || ||| || |||||| | Sbjct 54815 CGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATC 54756 Query 172045 CAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || |||||||| || || ||||| || || Sbjct 54755 CAGAAGGAGTCCACCCTCCACCTCGTGCT 54727 >seq1811 Length=963003 Score = 125 bits (138), Expect = 9e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || || || || || || ||||||||||| |||||| | Sbjct 706205 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGACGTTGAGCCCAGC 706146 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || ||||| || || ||||| ||||| || || ||||| Sbjct 706145 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 706086 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || || ||| || |||||| Sbjct 706085 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 706026 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || ||||| || || | || || ||||| Sbjct 706025 ATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGCGGTGG 705979 >seq1679 Length=19720504 Score = 111 bits (122), Expect = 2e-19 Identities = 337/520 (65%), Gaps = 3/520 (1%) Strand=Plus/Plus Query 78242 GGAACTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTATTCAATGCTACAGCA 78301 || || || || ||||| | || ||| | ||||||||| | || ||||| | || || Sbjct 15185174 GGCACCAACGGCCAGTCGAACGGCATTGTGCCTATGCTTCGCGTCTTCAACGACACCGCC 15185233 Query 78302 CGCTATGTCAACCAAGCGGGTCGTAGG---AAGGGGTCATTCGCTATGTACCTTGAACCT 78358 ||||| || |||| | || | | | ||||| || ||||| |||||||| || ||| Sbjct 15185234 CGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATGTACCTCGAGCCT 15185293 Query 78359 TGGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTCAACCAGGGTGACGAGGAAGCT 78418 ||||||||||| || ||| || | || || || ||||| || | ||||| | Sbjct 15185294 TGGCACGCCGACGTCGAGGACTTCATTGAGCTCCGCAAGAACCACGGCAAGGAGGAGGTC 15185353 Query 78419 CGATGCAGGGATTTATTCACTGCTATGTGGATTCCGGATCTTTTTATGAAGAGAGTTGAG 78478 || | | || | ||| || | ||| | || || ||||||||| || | || ||| Sbjct 15185354 CGCGCCCGCGACCTCTTCTACGCCCTCTGGGTCCCCGACCTTTTTATGCAGCGTGTCGAG 15185413 Query 78479 GAAGGAGGTAAATGGTCTCTTTTCTGTCCAGATAAGACTAAGGGTCTTTCAGATGTATAC 78538 | | | ||| | || ||||| || | || | ||||| || || ||||| ||| Sbjct 15185414 GCCAACAGCACCTGGACCCTCTTCTGCCCGAACGAGGCCAAGGGCCTCTCGGATGTCTAC 15185473 Query 78539 GGGGAAGAATTCGAAAAATTGTACACTAAATACGAAGAGGAAGGTCTCGCTATTAAGACA 78598 || || || ||| | | | ||| ||||| |||| || | || ||||| Sbjct 15185474 GGCGACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAGGGCCGCGGCCGCAAGACC 15185533 Query 78599 ATTGATGCATCTGAACTATGGAAAGCTATTATCAAAAGTCAAACAGAGACCGGCACCCCG 78658 || || || || ||| | || | | | || | ||||||||| ||| Sbjct 15185534 ATGCGCGCCCAGGACCTCTGGTACCAGATCCTGAGCTGCCAGATCGAGACCGGCGTGCCG 15185593 Query 78659 TATATGCTATACAAAGACAGCTGTAACAGAAAGTCTAACCAAAAGAACCTAGGTGTCATC 78718 | ||||| | ||| ||| ||| ||| | ||||| ||||| |||||||| || ||||| Sbjct 15185594 TTCATGCTCTTCAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACCTCGGCATCATC 15185653 Query 78719 AAAAGCTCTAACCTTTGCACAGAAATTCTGGAATACACGG 78758 || ||| ||||| ||||| || || | || ||| ||| Sbjct 15185654 AAGTCCTCGAACCTGTGCACCGAGATCATCGAGTACTCGG 15185693 Score = 100 bits (110), Expect = 4e-16 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 198558 GGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCG 198617 || || || |||||||| | || ||||| || || ||||| || || || | |||| Sbjct 3168277 GGCGCGCTCCTCGCCGGCCCTCCTGGTACCGGCAAGACCCTGCTGGCCAAGGCGACCGCG 3168336 Query 198618 GGTGAATCGAGTGTCCCCTT--TCTTCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCG 198675 || || | || || ||||| ||| || | | | || |||| ||| || |||||||||| Sbjct 3168337 GGCGAGGCCAGCGTACCCTTCTTCTCCATTTC-CGGCAGCGACTTT-ATTGAGATGTTCG 3168394 Query 198676 TTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCAT 198735 | || ||||| | |||||| || || ||||||| || || || | || || | Sbjct 3168395 TCGGCGTTGGCCCCTCGCGCGTGCGCGATCTCTTTGGCCAGGCCCGCAAGAACTCGCCCT 3168454 Query 198736 GTATCATCTTCATTGATGAGATTGACGCTGT 198766 | ||| |||||||||||||||| |||||||| Sbjct 3168455 GCATCGTCTTCATTGATGAGATCGACGCTGT 3168485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657847211601840