Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1811 120 3e-22 seq1679 104 2e-17 >seq1811 Length=963003 Score = 120 bits (132), Expect = 3e-22 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || ||||| ||||| || || || || ||||| || || || Sbjct 706208 ACCATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGACGTTGAGCCC 706149 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || || |||||||| ||||| || || || || || ||| Sbjct 706148 AGCGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGAT 706089 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GAT 24877 ||||| ||| | ||||| ||||| || ||||| ||||| || | || | ||| || Sbjct 706088 CAACAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGA--CG-GCCGCACGCTCAGCGAC 706032 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| || ||||| || || || ||| | ||| | || ||||||| || Sbjct 706031 TACAACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGCGGTGG 705979 >seq1679 Length=19720504 Score = 104 bits (114), Expect = 2e-17 Identities = 328/495 (66%), Gaps = 15/495 (3%) Strand=Plus/Minus Query 139504 ACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT--- 139560 ||||| |||||||| || || || || ||||| | | ||| || || ||||| || Sbjct 15185307 ACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGCTTGCCGCCGCCC 15185248 Query 139561 TGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCG-C 139619 || || |||| || | | | ||||| ||||| | ||| ||| | | ||| ||| | Sbjct 15185247 TGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACAATGCCGTTCGAC 15185188 Query 139620 TGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAG-CTCGGACGTCATGTACATTGATGC 139678 || |||||||||| || | ||| |||| | |||| || || | |||| || Sbjct 15185187 TGG-CCGTTGGTGCCGGCGACGTAGCTGCC-CGAGGCGCGGATGTTGTGGATGTTGACGC 15185130 Query 139679 CGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATACCT 139737 |||| |||||| | | ||||| || |||| || || | |||| | | || || Sbjct 15185129 CGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCG-AGCGTCTGGAAGATGCCC 15185071 Query 139738 CTTATGCTGTCGTCCTGCATCGTG-ACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGT 139796 || |||||||| ||| ||| || || ||||| ||| | |||||| | || Sbjct 15185070 TCGATCGAGTCGTCCTTCAT-GTGCACGAGGAAGCAGCTCGACATTTGCGGGCGGGGGGT 15185012 Query 139797 GCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTA 139856 |||||| || || || || | ||||||||||| | | | |||||||| ||||| Sbjct 15185011 GCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTGCGACATCATGTCGTA 15184952 Query 139857 CGTTTCGATGGCGCTCACAATATC--CCTTCCGTGGATACCGACAGAGACTCGCATCAGC 139914 || |||||||||| | || || ||| |||||| ||||| ||||| ||||| ||| Sbjct 15184951 GGTCTCGATGGCGCGATCGATGTCGTGCTT--GTGGATGCCGACGGAGACGCGCATGAGC 15184894 Query 139915 ATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGG 139974 || || || || ||||| | | ||| || | || ||| || | ||| || Sbjct 15184893 ATGTGCTGCGGGCGCTCGGCGATCTTGCCGTCAACCTTGAGCAGGTACGAGCGCTCGAGC 15184834 Query 139975 GTCTTGTAGCCAAAG 139989 |||||| |||| ||| Sbjct 15184833 GTCTTGAAGCCGAAG 15184819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449887212989160