Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1679 226 3e-54 seq1811 95.1 1e-14 seq1721 89.7 5e-13 >seq1679 Length=19720504 Score = 226 bits (250), Expect = 3e-54 Identities = 638/969 (66%), Gaps = 27/969 (3%) Strand=Plus/Minus Query 147462 GATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGC 147521 ||| || || || ||||||||||| ||| || | | | ||||| | ||| |||| Sbjct 15185731 GATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGATCTCGGT 15185672 Query 147522 GCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGC 147581 ||||||||| | | || |||| || | || | ||| || || || ||||| || Sbjct 15185671 GCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGC 15185612 Query 147582 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGA-CTTGCGTTTCAACGATAA---ACC 147637 ||| |||||||||||| |||| |||||||||||| || || ||| ||| ||| Sbjct 15185611 GTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAG-GATCTGGTACC 15185553 Query 147638 TATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGT 147697 |||||||| || |||| || || ||||||||| || ||||| ||||||| Sbjct 15185552 AG---AGGTCCTGGGCGCGCATGGTCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGCTCGT 15185496 Query 147698 ACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACA 147757 | | | || ||||||||||||||| ||| | ||||| || | ||| || | Sbjct 15185495 AGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTGGCCTCGTTCGGGCAGA 15185436 Query 147758 TCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCG 147817 || | ||| || || || | || || ||||||| || || || ||||| || | Sbjct 15185435 AGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCCAGAGGG 15185376 Query 147818 CGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTT---GCGTTTCA-AATTA 147873 |||| | || ||||| || | ||||| ||| ||| ||| | ||| | Sbjct 15185375 CGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCTCAATGA 15185316 Query 147874 AGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC 147933 || | | || |||||||||||| || || | ||| | ||| | | || || ||| Sbjct 15185315 AGTCCTC----GACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGCGC 15185260 Query 147934 TTTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCC 147990 || ||||| |||||| || | ||| | ||| ||| || ||||| | ||| || | Sbjct 15185259 TTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCACA 15185200 Query 147991 AGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGC 148050 | |||| ||| |||||||||| || | |||||| ||| || | | ||| Sbjct 15185199 ATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGGCGCGGATGTTGTGG 15185140 Query 148051 ACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTG 148110 | ||| ||||| ||||||||| ||||||| || ||| ||||| | | ||| | Sbjct 15185139 ATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTCTCGAGCGTCTGG 15185080 Query 148111 TAGATGCCGTCGATGCTGTCGTTTTTGACGC---CAAGCAAAAAACACGAACACATTTGC 148167 ||||||| ||||| ||||| || | | | || || | | ||| ||||||| Sbjct 15185079 AAGATGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGA---CATTTGC 15185023 Query 148168 GGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTC 148227 || | || || || ||| ||||| || | |||||||| || || || || | Sbjct 15185022 GGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTGCGAC 15184963 Query 148228 ATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACG 148287 |||||| || ||||| || ||| |||||||||| ||| ||||| | | |||| Sbjct 15184962 ATCATGTCGTAGGTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAGACG 15184903 Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGC-AACTTGATTGTTGATCTTGAGAAGATATCC 148346 ||||||||||||||||| || || ||||| | |||| || | |||||| || || Sbjct 15184902 CGCATGAGCATGTGCTGCGGGCGCTCGGCGATCTTG-CCGTCAACCTTGAGCAGGTACGA 15184844 Query 148347 ATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 ||||| || ||| | || ||| | | ||| || || || | ||||| || ||| Sbjct 15184843 GCGCTCGAGCGTCTTGAAGCCGAAGAAGTCGTACTCGAAGTCGCGGTCGTACTTGACGGC 15184784 Query 148407 CGCATCTAG 148415 ||| || || Sbjct 15184783 CGCGTCGAG 15184775 >seq1811 Length=963003 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||| | || || || |||||||| || |||| Sbjct 706012 GACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 706071 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||||||||| || || ||||| || || || || || || |||| Sbjct 706072 AAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 706131 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||| || |||| || | || || || || || || || Sbjct 706132 TTCTCGATGGTGTCGCTGGGCTCAACGTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTG 706191 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 706192 ACGAAGATCTGCATG 706206 >seq1721 Length=237271 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 46750 TCGAGCACG-TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGC 46808 |||| |||| |||| ||||| ||| ||||||| |||||||||||| | || || || Sbjct 46353 TCGA-CACGCTGCCCTGCGTGCGCCAAAAGGCGCAGTGGGCCATGCGCTACATGGACGGC 46411 Query 46809 GAGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttt 46868 | | | ||| | ||||||||| | || | || ||| ||||| ||| | || || Sbjct 46412 AACATCTGCACCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATCTTCTTC 46471 Query 46869 tCGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACG 46928 |||||| ||| |||||| || | | || | ||| | |||||||| || || Sbjct 46472 TCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACC 46531 Query 46929 TTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984 ||| || ||| ||||| |||||||| || | ||||| |||||||| || || Sbjct 46532 TTCTCCAATGAGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGCTTGCCT 46587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476600196238920