Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1679 262 5e-65 seq497 82.4 9e-11 >seq1679 Length=19720504 Score = 262 bits (290), Expect = 5e-65 Identities = 441/633 (70%), Gaps = 4/633 (1%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 |||||||||||||||||||| || || | | | ||||| || |||||||| ||| Sbjct 7098249 ATCTTGAGCTTGGGGAAGGGGCGCGGCTCGCGGTTAAGCTGTTCCTTGAGGGGCTCGACG 7098308 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 ||||| ||| | ||| ||| || | | ||| | || ||||| | |||||| Sbjct 7098309 TGGTTTTTGTAAATGTGGCAGTCGCCGATGACGTGGATGAACTCCCCGGCGCGCAGGCCG 7098368 Query 146992 GT-CACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050 || ||| | | | | || | ||||| |||| ||| ||| ||||||||||| || || Sbjct 7098369 GTGCACTTTG-CGAGCAGATGCGTGAGAAGCGCGTACGAGGCAATGTTGAAGGGCACGCC 7098427 Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTA 147110 |||||| ||||| ||||||| |||||||| |||||||||||||| || | || |||||| Sbjct 7098428 CAGGCCGATGTCGCCCGACCGCTGGTACATTTGGCACGAGAGCTCGCCCTTGGACACGTA 7098487 Query 147111 AAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCA 147170 |||||| | |||||||| |||||||| |||||| | | | |||| |||||||| Sbjct 7098488 AAACTGCGCGAACATGTGGCAGGGCGGCAGGGCCATGAGGTGGAACGCCGCCGGGTTCCA 7098547 Query 147171 GGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCT 147230 |||||||| | || || | | | |||||| | || || | | || | | Sbjct 7098548 GGCCGAGAGGATCATGCGGCGGTCCGTCGGGTTCGTTTTGATGGTGTGCACAAGCTGCGC 7098607 Query 147231 CAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGGCCCCAA 147289 |||||||| ||||||||||| |||| | ||| ||| | | |||| ||| |||| Sbjct 7098608 GAGCTGGTCTACGCCCTGGCCGGCGTA-CTCGTCGTGCATGGTCTTGTACTCGGCGCCAA 7098666 Query 147290 AGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGC 147349 |||| | ||||||||||||||| || || || || ||||| || | | || || || Sbjct 7098667 AGTGGCGCCACTGGAAGCCGTAAACGGGGCCGAGATCGCCCTCCTCGCGATCCGTGAGGC 7098726 Query 147350 CCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGG 147409 | | | || || || ||||||||| | ||||||| ||| | |||| | Sbjct 7098727 CGATCTTGTCAAGGTACGCGCGGGACCCGTTGCCGTCCCAAATGTGAATGTCCTTTTCCT 7098786 Query 147410 AGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCC 147469 ||| ||| | | ||| |||| ||||||||||||||| ||||| || || | Sbjct 7098787 GCAGCGACTTGGCGCTGGTGTCGCCCGAGATGAACCAGAGCAGTTCCTCGGCGACGCCGC 7098846 Query 147470 TCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGA 147502 ||||||||| | |||||| |||||||| |||| Sbjct 7098847 GCCAAAAGACGCGCTTGGTCGTCAGCAGCGGGA 7098879 Score = 120 bits (132), Expect = 4e-22 Identities = 339/507 (67%), Gaps = 13/507 (3%) Strand=Plus/Minus Query 146996 CGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGC 147055 || |||| || |||| |||||||| ||||||| | ||||| ||||| || || || Sbjct 10789270 CGCGGGCTACGATGTGCGTGAGCAGGCAGTAGCTCGTAATGTTAAAGGGCACGCCGAGTG 10789211 Query 147056 CCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCC--CCGTCGGCCACGTAAAA 147113 | | ||| | | |||||| |||||||||||||| ||| ||| | | | || || Sbjct 10789210 CGACGTCGGCGCTGCGCTGGTAGAGCTGGCACGAGAG-TCCTTCCGG-GTCAATGTTGAA 10789153 Query 147114 CTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGC 147173 |||| ||| | ||||||||| |||| |||| | | ||| | || || |||| Sbjct 10789152 CTGGAACAAGCAGTGGCACGGAGGCAAGACCATCTCCGACAGCTGAGCCGGAGACCAGCT 10789093 Query 147174 CGAGACCACCAGCCGCCTGCTCTCGGGGTTCCT-CTTAATCTCTTCGATAACCCACCTCA 147232 | || || | | || ||| | || ||| | | || ||| |||| || ||| Sbjct 10789092 GCATACGACGTGTCTCCGGCTTCCTGGATTCTTACGCAAGCTCG-CGATCACTTCGTTCA 10789034 Query 147233 GCTGGTCCACGCCCTGGCCCCCGTAGT--TTGTCCCGCAGTCCACGTACCTGGCCCCAAA 147290 |||||| || ||||| ||| ||||| | || | | |||| ||||| |||||| Sbjct 10789033 TCTGGTCTACCCCCTGCCCCGTGTAGTCATCGTTCATC-GTCC-CGTACTCCGCCCCAGC 10788976 Query 147291 GTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCT-TTCTGTG-CGAGAAG 147348 ||| | ||| ||||||||||| | || || ||||||| || | | || || | || Sbjct 10788975 GTGGCGCCATTGGAAGCCGTAGAGGGGTCCAGTATCGCCGGCCTCGTATTTGTCGCGCAG 10788916 Query 147349 CCCGCCCGCTT-GAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGC 147407 ||||| ||||| | | ||| ||||| ||| | ||||| |||| ||| |||| Sbjct 10788915 CCCGCACGCTTCCAAATGCTCTTGGGACGTGTGACCCTCCCAAATGCGCACGTTTTTGGA 10788856 Query 147408 GGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCC 147467 ||||| || | ||||||||| || || | | |||||| |||||||| | | ||| Sbjct 10788855 AGAGAGTTCGCGCGCGTCCGTGGACCCGCGCAGAATCCAGAGTAGCTCCTCAACGATCCC 10788796 Query 147468 CCTCCAAAAGACCCTCTTGGTGGTCAG 147494 | | || ||| ||||| | ||||| Sbjct 10788795 ACGCGTGAACACCTTCTTGCTTGTCAG 10788769 >seq497 Length=6716 Score = 82.4 bits (90), Expect = 9e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 147301 TGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTG 147360 ||||| ||||||| || || | ||||||||||| ||| | |||||| || | | Sbjct 1967 TGGAACCCGTACATCGGGCCAATGTCGCCGGGCTCATAGTGGGTCAAGCCCACCTTGTCG 2026 Query 147361 AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTA 147420 || ||| | || |||| | | |||||||| ||| ||| | || |||||| | Sbjct 2027 AGGTGTTCGCGTGAAGAGTGGCCATTCCAGATGCGCACGCCCCTCTCGTTGAGCTCGTCG 2086 Query 147421 GAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACC 147480 ||| |||||||| ||||||||||| | |||||||| | || || | ||||| Sbjct 2087 TTGTCTGTGGAGCCACGGATGAACCACAAGAGCTCCTCGATGACGCCGCGGATGAAGACA 2146 Query 147481 CTCTTGGTGGTCAGCAGGGGGAACT 147505 | ||| |||||||| | |||| || Sbjct 2147 CGCTTCGTGGTCAGGAATGGGATCT 2171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583474528720800