Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_027204.1 Length=194701 Score E Sequences producing significant alignments: (Bits) Value seq1679 84.2 3e-11 >seq1679 Length=19720504 Score = 84.2 bits (92), Expect = 3e-11 Identities = 191/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 176375 CGGTTCGCGTTCAAGCTGTTCCTTCACCTGATCGAAGTGATTGTTATAGATGTGGGTATC 176434 ||| ||||| | |||||||||||| | | |||| ||| || || || |||||| || Sbjct 7098272 CGGCTCGCGGTTAAGCTGTTCCTTGAGGGGCTCGACGTGGTTTTTGTAAATGTGGCAGTC 7098331 Query 176435 ACCAAGGTTGCCGATCAGTTCCCCGACTTCCAAGCCGCATTCCAGCGCGATCAGATGTGT 176494 || | | | ||| | |||||| | || |||| | |||| |||||| || Sbjct 7098332 GCCGATGACGTGGATGAACTCCCCGGCGCGCAGGCCGGTGCACTTTGCGAGCAGATGCGT 7098391 Query 176495 CAGGAGTGCGTAAGAGGCGATGTTGAATGGAAGCCCCAAGAAGACGTCCACGGACCGCTG 176554 || || ||||| ||||| |||||||| || | |||| | || ||| | |||||||| Sbjct 7098392 GAGAAGCGCGTACGAGGCAATGTTGAAGGGCACGCCCAGGCCGATGTCGCCCGACCGCTG 7098451 Query 176555 ATTCCAAAGGCAGGACAGTTTCCCGTTGCGGACATAGAACTG-GAAACCGTAGTGACACG 176613 | | |||| || || | || ||| || || ||||| | | | | ||| || | Sbjct 7098452 GTACATTTGGCACGAGAGCTCGCCCTTGGACACGTAAAACTGCGCGAACAT-GTGGCAGG 7098510 Query 176614 GCGGCAAAGCCATTAGATCGACCGCCCCGACATTCCAAGCCGAGA 176658 |||||| ||||| || | || |||| | ||||| ||||||| Sbjct 7098511 GCGGCAGGGCCATGAGGTGGAACGCCGCCGGGTTCCAGGCCGAGA 7098555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622900818445320