Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1811 113 4e-20 seq1824 89.7 4e-13 >seq1811 Length=963003 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||||| | |||| |||| |||||||| || ||| Sbjct 706009 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 706068 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||||||||| || || | ||||| || || |||||| | ||| Sbjct 706069 GCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 706128 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| ||||| || || || || | ||||| || || || Sbjct 706129 ACGTTCTCGATGGTGTCGCTGGGCTCAACGTCGAGGGTGATGGTCTTGCCGGTGAGCGTC 706188 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 706189 TTGACGAAGATCTGCAT 706205 >seq1824 Length=63427 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||||| | |||| |||| |||||||| || ||| Sbjct 54742 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 54801 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || ||||||||||| || || | ||||| || || |||||| ||| Sbjct 54802 GCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTC 54861 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | || ||||| || || Sbjct 54862 ACGTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTC 54921 Query 27231 TTCACAAAGATTTG 27244 || || ||||| || Sbjct 54922 TTGACGAAGATCTG 54935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424924834593864