Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1679 351 1e-91 seq1811 150 2e-31 seq1817 134 2e-26 seq1537 125 8e-24 seq1824 114 1e-20 >seq1679 Length=19720504 Score = 351 bits (388), Expect = 1e-91 Identities = 1154/1771 (65%), Gaps = 57/1771 (3%) Strand=Plus/Minus Query 80025 GGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTA 80084 |||||| | ||||| ||||||||||||| || |||||||| || |||||| ||| Sbjct 15186628 GGCCTTGGGGCGCGTGCGCAGATAGTACAATCCGGTCTTGAGACCGCGCTTCCACGAGTA 15186569 Query 80085 CAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTG 80144 | ||| || ||||||| | |||| || ||||| ||||||| || ||||| Sbjct 15186568 AAAGTGGCACGAGGTGAGCTTGCTGACGGTGGCGTCGGCCATGTAGATGTTGAGCGACTG 15186509 Query 80145 AGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAAT 80204 ||||| |||||| || || ||||| || || | || || | | || || Sbjct 15186508 CGACTGGTCGATGAAGGCGCCGCGATCGGCGGCGAGATCGATGAGGCAGCGCTGCTTGAT 15186449 Query 80205 TTCCCATACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGA---TTTTG 80258 ||||| || || || | |||| || || || || ||| | | || || Sbjct 15186448 CTCCCAGACGGTCTTGTAGAGCGCCTTG---AGGTCGTCGGGGATGGCGCCAACGTTCTG 15186392 Query 80259 CACACTGCCACCGTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTT 80318 ||| ||| | ||| | || || || | | | ||||||| ||| || Sbjct 15186391 CACCGAGCCGCGGTCGGCCATGATCTGGTTGCGGATGGCCGGGGTCCAGAGACCGCGCGA 15186332 Query 80319 GTGCAGATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACG 80378 | || || || | ||||| |||| | | ||||| || |||||| ||| || Sbjct 15186331 GATGAGGTCCTTGAGCAGGTGTGTGTTGACGACCGTGAACTCGCCAGCGAGGACGCGGCG 15186272 Query 80379 CAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGT 80438 | |||| ||| | ||| | |||||||| |||||| ||| ||||| ||||| | || Sbjct 15186271 CGAGTACATGTTGCTGGTGAAGGGCTCAAAGGCCTCGCAGTTGCCGAGAATCTGCGAGGT 15186212 Query 80439 GCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATC 80498 ||||| ||||| || |||||| ||| || || |||| ||||||| | ||| Sbjct 15186211 CGAGGCCGTGGGCATGGGCGCGACCAGCAGCGAGTTACGCACACCGTGCTGCATGACGCG 15186152 Query 80499 CTCGCGCAAA-TCTGACCAAAAATCAACCC--CAACGCTGTGACC--------CCACATG 80547 || |||| ||| || | || || | || || | ||| | | Sbjct 15186151 CTGACGCAGCGTCT--CCCAGTCCCAGCCGAGCTCCGGGTTGGGCTTCTCGTTCCAGAGG 15186094 Query 80548 TCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCC 80607 ||| ||| || ||||||| | || ||||| | || |||| ||||||||||||| Sbjct 15186093 TCGAACTGGAACTTGCCCTCGCTCATGGGCGACCCGGAAAAGGTCTGGTACGGGCCCTCC 15186034 Query 80608 GTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCC 80667 || |||||||| ||||| | | ||| | || ||| ||| |||| | | Sbjct 15186033 TCCTGCGCCAGCTCGCACGAGGCGGTGCAGGCGCCAAAGTAGATGGTCTCGAAGATGTCG 15185974 Query 80668 TTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCA 80727 ||| | ||| |||| ||| || || | |||| || | ||||| | | | Sbjct 15185973 CGGTTGAGCTTGCGGGCCTCCGGGCTCTCAAAGGGGAAGCGCAGCTCCATGAGCGCATTG 15185914 Query 80728 GCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCC 80787 || |||||||||||||| ||| |||| |||||||||||| |||| |||||||||||| Sbjct 15185913 GCGAGGCCCTGAACGCCAATGCCGATGGGGCGGTGGCGCGTGTTGCTGCGCTCGGCCTCC 15185854 Query 80788 GGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTA 80847 | ||||| ||||| |||||||||||||| ||||| || || ||| || Sbjct 15185853 TCGACGGGGTAGAAGTTGCCGTCGATGACGCGGTTGAGGTTCTTGGTGACGACCTTGGTG 15185794 Query 80848 ACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCC-CTTCACAAATGCCG-------GAA 80899 ||||| | || ||| |||||| | ||| ||| | ||| || || | | Sbjct 15185793 ACATCGTAGAGGGCCTGGAAGTCG--TAGGTGCCCTCCTCAATGTTGACGAACTTGCGCA 15185736 Query 80900 GGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTT 80959 || | | ||| || || ||||| ||||| ||||| |||| | | |||||| ||| | Sbjct 15185735 GGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCGATGATCT 15185676 Query 80960 CCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGC 81019 | ||||||| || || ||||| || | || ||||| |||||||| |||||| ||||| Sbjct 15185675 CGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGC 15185616 Query 81020 AAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGT 81079 | ||||||||| || |||| |||| |||||||||| ||| | | ||||| || Sbjct 15185615 AGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAGCTCAGGATCTGGT 15185556 Query 81080 CCCAAATCTC----GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTG 81135 ||| | || |||||| | | ||||||| ||| || | | || Sbjct 15185555 ACCAGAGGTCCTGGGCGCGCATGG----TCTTGCGGCCGCGGCCCTCCTTCTCGTAGCGC 15185500 Query 81136 GCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGG-TCTGGGCACTCGTTAG 81193 |||| ||| || | ||||| | | |||| | || | |||| || ||| |||||| | Sbjct 15185499 TCGTAGAGC-TCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTGGC-CTCGTTCG 15185442 Query 81194 GGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCC 81253 |||| | ||| |||| | ||| | ||| ||| || ||| ||| ||| |||| || Sbjct 15185441 GGCAGAAGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGGTCGGGGACCC 15185382 Query 81254 AGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACT 81313 |||||||| ||| ||||||||| ||| ||||||| | || ||||| ||| | || Sbjct 15185381 AGAGGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGCT 15185322 Query 81314 CGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGC 81373 | | |||||| || ||| || ||||| ||||| || |||| ||||| || ||||||| Sbjct 15185321 CAATGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAGGAGCCCTTGC 15185262 Query 81374 G---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGA 81430 | | ||| ||||||| ||||| ||||| || |||| || || || | |||||| | Sbjct 15185261 GCTTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGAAGCATAGGCA 15185202 Query 81431 TGATACCATCTGACTGACCGTTCGTACCCACGA--TACGCGACCCCTTGGCGCGCACCTT 81488 || || | ||||| ||||| || || ||| || || ||| |||||| | || Sbjct 15185201 CAATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTA-GC-TGCCCGAGGCGCGGATGTT 15185144 Query 81489 GCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGT-TC-ATG 81546 | ||| | |||||||| || | |||| || | || || | | ||| || | Sbjct 15185143 GTGGATGTTGACGCCGATGCCGCCGGCGTACTTGGAGA--TGCGCGCGCAGGTCTCGAGC 15185086 Query 81547 GTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATC 81606 |||| | || |||||||| || | ||||||| | | ||| ||||| ||||| Sbjct 15185085 GTCTGGAAGATGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATT 15185026 Query 81607 TGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTT 81666 || |||| | |||||| ||||| || || || || ||||| |||| | | Sbjct 15185025 TGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAACTTCTGC 15184966 Query 81667 GACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCT 81726 ||||||| ||| ||||| || || |||| || |||| ||| || |||| | Sbjct 15184965 GACATCATGTCGTAGGTCTCGATGGCGCGATCGATGTCGTGCTTGTGGATGCCGACGGAG 15184906 Query 81727 ACACGCATAAACATGTACTG-GGGCGTCTCG 81756 || ||||| | ||||| ||| ||||| |||| Sbjct 15184905 ACGCGCATGAGCATGTGCTGCGGGCG-CTCG 15184876 >seq1811 Length=963003 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| ||||||||||| || || || || |||||| | | Sbjct 706205 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGACGTTGAGCCCAGC 706146 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||| || || |||||||||||||| || || || || || Sbjct 706145 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAA 706086 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| |||||||| | || || || ||| ||||| || Sbjct 706085 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGC-GACTACAA 706027 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGAC 27634 |||| ||||| ||||| || || || || | || || |||||||||| Sbjct 706026 CATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGCGGTGGAC 705977 >seq1817 Length=459392 Score = 134 bits (148), Expect = 2e-26 Identities = 251/367 (68%), Gaps = 4/367 (1%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 |||||||||||||| || |||||||||||| | | |||||| ||||| || | || Sbjct 224589 GACGGCCTCAAGCCCTCGCAGCGCAAGGTGCTCTTTGCCTGCTTCAAGCGCAAGC--TCA 224646 Query 32044 AGT--GACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACC 32101 ||| ||||| ||||| |||||||| |||||||| | ||||| |||| || |||| Sbjct 224647 AGTCGGACATCAAGGTCGCGCAGCTCGTTGGCTACGTCTCGGAGCACTCGGCGTACCACC 224706 Query 32102 ACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAA 32161 |||| |||| ||||| | || || |||| | | || |||| |||||| || | | Sbjct 224707 ACGGTGAGGTCTCGCTGTCGTCGACGATCGTCAGCATGGCGCAGACCTTTGTGGGCTCGA 224766 Query 32162 ATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG 32221 | ||| | ||| | ||| || || ||||| || | || | ||| ||||||| Sbjct 224767 ACAACATCAACCTGCTCTTCCCCAGCGGCCAGTTCGGTTCGCGCATTCTCGGCGGCAAGG 224826 Query 32222 ATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCG 32281 | || || | |||||||| || || || ||||| ||| ||||||| | ||||| Sbjct 224827 ACGCGGCCTCGGCGCGTTACATTTTTACGCGCCTCGCGCCTCTCACGCGCAGGCTTTTCC 224886 Query 32282 ACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGG 32341 || | ||||| ||| | ||| | ||| || ||||| ||| ||||||| Sbjct 224887 ACGAGCACGACGACGCGCTCCTCGACTACCTCGAGGACGACGGCCAGTCCATCGAGCCCA 224946 Query 32342 TGTTCTA 32348 ||| ||| Sbjct 224947 TGTACTA 224953 Score = 91.5 bits (100), Expect = 2e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 31210 AAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATTATT 31269 |||||||||||||||||| ||||| || ||| || || | ||||| || || | Sbjct 223776 AAGCTCGACGACGCCAACAACGCCGGCGGCCGCAACTCCGACAAATGCACTCTCATCCTC 223835 Query 31270 ACCGAGGGTGACTCGGCAAAGGCGCTTGCTAT-TGCTGGCTTGAGTGTTGTGGGGCGCAA 31328 |||||||||||||| |||||| |||| || || || ||| | || || || || ||| | Sbjct 223836 ACCGAGGGTGACTCCGCAAAGACGCTCGCCATCAGCGGGC-TCAGCGTCGTCGGCCGCGA 223894 Query 31329 TGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTC 31382 | ||| || ||||| | || ||||||| || ||||| || || ||||| Sbjct 223895 CAACTACGGCGTCTTTCCCTTGCGTGGCAAGCTGCTCAACGTCCGCGAGGCCTC 223948 >seq1537 Length=224974 Score = 125 bits (138), Expect = 8e-24 Identities = 287/427 (67%), Gaps = 9/427 (2%) Strand=Plus/Minus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT---G 32040 ||||||||||| || || ||||||||||| | | ||| || ||| ||||| | Sbjct 203008 GACGGCCTCAAACCCTCGCAGCGCAAGGTCCTCTTTGCCGCGCTTAAGCGCAACCTCGTG 202949 Query 32041 TCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCAC 32100 || || | |||||||| ||||| | ||| || | ||||| || ||||| ||| Sbjct 202948 TCCTCAGAGCTCAAGGTGGCCCAGCTCGCCGGCGTTGTCGGCGAGCAGACCGCCTACCAC 202889 Query 32101 CACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCA 32160 ||||| ||| ||| || |||||| |||| | || ||| ||||||| || Sbjct 202888 CACGGTGAGCAGTCTCTGACCTCCACCATCACCAACATGGCGCAGGACTTTGTGGGCAGC 202829 Query 32161 AATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAG 32220 || || || | || | || || || ||||| || || || || ||||||||| Sbjct 202828 AACAATCTCCCGCTCCTGTACCCCTCGGGCCAGTTCGGCACGCGACTGCAGGGTGGCAAG 202769 Query 32221 GATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACC--TTCG-ACGCGCAAGATT 32277 || ||||||||| | ||||||||||||||||| || || | | || ||||| | || Sbjct 202768 GACGCTGCGAGCCCGCGTTACATCTTCACCCGCCT-ACAGCGGTACGCGCGCGCCATCTT 202710 Query 32278 TTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAG 32337 | || || ||||| ||| | || || ||| || || || || |||||| Sbjct 202709 TCCGGCC--GAAGACGACGCGCTTCTTGAGCGCAACGAGGACGATGGCATGCTTGTCGAG 202652 Query 32338 CCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGA 32397 || || | |||| || || | || ||| | | ||||||||||| ||||||||||| Sbjct 202651 CCCGTCGTGTACAAGCCCGTCATCCCCATGGCCCTTGTGAACGGTGCCGAAGGCATCGGC 202592 Query 32398 ACGGGGT 32404 || |||| Sbjct 202591 ACTGGGT 202585 >seq1824 Length=63427 Score = 114 bits (126), Expect = 1e-20 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468 || ||||| |||||||| || || || ||||| || || || || || ||| | || Sbjct 54935 CAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 54876 Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 | || | || ||||| | || ||||||||||||||||| || || || || || ||| Sbjct 54875 ACGATCGAGAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAACAG 54816 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGT 27587 || || || || || || ||||| |||||||| | || || || ||| ||||| || | Sbjct 54815 CGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGC-GACTACAACAT 54757 Query 27588 CCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| ||||| ||||| || || || || | || || ||||| || Sbjct 54756 CCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGG 54712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570297232958640